Literature DB >> 20044483

High affinity anti-inorganic material antibody generation by integrating graft and evolution technologies: potential of antibodies as biointerface molecules.

Takamitsu Hattori1, Mitsuo Umetsu, Takeshi Nakanishi, Takanari Togashi, Nozomi Yokoo, Hiroya Abe, Satoshi Ohara, Tadafumi Adschiri, Izumi Kumagai.   

Abstract

Recent advances in molecular evolution technology enabled us to identify peptides and antibodies with affinity for inorganic materials. In the field of nanotechnology, the use of the functional peptides and antibodies should aid the construction of interface molecules designed to spontaneously link different nanomaterials; however, few material-binding antibodies, which have much higher affinity than short peptides, have been identified. Here, we generated high affinity antibodies from material-binding peptides by integrating peptide-grafting and phage-display techniques. A material-binding peptide sequence was first grafted into an appropriate loop of the complementarity determining region (CDR) of a camel-type single variable antibody fragment to create a low affinity material-binding antibody. Application of a combinatorial library approach to another CDR loop in the low affinity antibody then clearly and steadily promoted affinity for a specific material surface. Thermodynamic analysis demonstrated that the enthalpy synergistic effect from grafted and selected CDR loops drastically increased the affinity for material surface, indicating the potential of antibody scaffold for creating high affinity small interface units. We show the availability of the construction of antibodies by integrating graft and evolution technology for various inorganic materials and the potential of high affinity material-binding antibodies in biointerface applications.

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Year:  2009        PMID: 20044483      PMCID: PMC2844222          DOI: 10.1074/jbc.M109.020156

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  40 in total

1.  Selection of peptides with semiconductor binding specificity for directed nanocrystal assembly.

Authors:  S R Whaley; D S English; E L Hu; P F Barbara; A M Belcher
Journal:  Nature       Date:  2000-06-08       Impact factor: 49.962

2.  Biomimetic synthesis and patterning of silver nanoparticles.

Authors:  Rajesh R Naik; Sarah J Stringer; Gunjan Agarwal; Sharon E Jones; Morley O Stone
Journal:  Nat Mater       Date:  2002-11       Impact factor: 43.841

3.  Functional analysis of the chitin-binding domain of a family 19 chitinase from Streptomyces griseus HUT6037: substrate-binding affinity and cis-dominant increase of antifungal function.

Authors:  Yoshikane Itoh; Tomokazu Kawase; Naoki Nikaidou; Harumi Fukada; Masaru Mitsutomi; Takeshi Watanabe; Yoshifumi Itoh
Journal:  Biosci Biotechnol Biochem       Date:  2002-05       Impact factor: 2.043

4.  Virus-based toolkit for the directed synthesis of magnetic and semiconducting nanowires.

Authors:  Chuanbin Mao; Daniel J Solis; Brian D Reiss; Stephen T Kottmann; Rozamond Y Sweeney; Andrew Hayhurst; George Georgiou; Brent Iverson; Angela M Belcher
Journal:  Science       Date:  2004-01-09       Impact factor: 47.728

Review 5.  Molecular biomimetics: nanotechnology through biology.

Authors:  Mehmet Sarikaya; Candan Tamerler; Alex K-Y Jen; Klaus Schulten; François Baneyx
Journal:  Nat Mater       Date:  2003-09       Impact factor: 43.841

6.  Beta-lactamase inhibitors derived from single-domain antibody fragments elicited in the camelidae.

Authors:  K E Conrath; M Lauwereys; M Galleni; A Matagne; J M Frère; J Kinne; L Wyns; S Muyldermans
Journal:  Antimicrob Agents Chemother       Date:  2001-10       Impact factor: 5.191

Review 7.  Single domain camel antibodies: current status.

Authors:  S Muyldermans
Journal:  J Biotechnol       Date:  2001-06       Impact factor: 3.307

8.  Metal-recognition by repeating polypeptides.

Authors:  S Brown
Journal:  Nat Biotechnol       Date:  1997-03       Impact factor: 54.908

9.  Identification and characterization of Cu(2)O- and ZnO-binding polypeptides by Escherichia coli cell surface display: toward an understanding of metal oxide binding.

Authors:  Corrine K Thai; Haixia Dai; M S R Sastry; Mehmet Sarikaya; Daniel T Schwartz; François Baneyx
Journal:  Biotechnol Bioeng       Date:  2004-07-20       Impact factor: 4.530

10.  Antibody recognition of chiral surfaces. Enantiomorphous crystals of leucine-leucine-tyrosine.

Authors:  Merav Geva; Felix Frolow; Miriam Eisenstein; Lia Addadi
Journal:  J Am Chem Soc       Date:  2003-01-22       Impact factor: 15.419

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  6 in total

Review 1.  In situ click chemistry: from small molecule discovery to synthetic antibodies.

Authors:  Steven W Millward; Heather D Agnew; Bert Lai; Su Seong Lee; Jaehong Lim; Arundhati Nag; Suresh Pitram; Rosemary Rohde; James R Heath
Journal:  Integr Biol (Camb)       Date:  2013-01       Impact factor: 2.192

2.  Development and characterization of antibody reagents for detecting nanoparticles.

Authors:  Supriya Ravichandran; Mark A Sullivan; Linda M Callahan; Karen L Bentley; Lisa A DeLouise
Journal:  Nanoscale       Date:  2015-11-16       Impact factor: 7.790

3.  AbPredict 2: a server for accurate and unstrained structure prediction of antibody variable domains.

Authors:  Gideon Lapidoth; Jake Parker; Jaime Prilusky; Sarel J Fleishman
Journal:  Bioinformatics       Date:  2019-05-01       Impact factor: 6.937

Review 4.  Computer-aided antibody design.

Authors:  Daisuke Kuroda; Hiroki Shirai; Matthew P Jacobson; Haruki Nakamura
Journal:  Protein Eng Des Sel       Date:  2012-06-02       Impact factor: 1.650

5.  Direct detection of thrombin binding to 8-bromodeoxyguanosine-modified aptamer: effects of modification on affinity and kinetics.

Authors:  Shou Goji; Jun Matsui
Journal:  J Nucleic Acids       Date:  2011-09-15

6.  Structural guided scaffold phage display libraries as a source of bio-therapeutics.

Authors:  Y K Stella Man; Danielle DiCara; Nicole Chan; Sandrine Vessillier; Stephen J Mather; Michelle L Rowe; Mark J Howard; John F Marshall; Ahuva Nissim
Journal:  PLoS One       Date:  2013-08-09       Impact factor: 3.240

  6 in total

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