Literature DB >> 22836343

In situ click chemistry: from small molecule discovery to synthetic antibodies.

Steven W Millward1, Heather D Agnew, Bert Lai, Su Seong Lee, Jaehong Lim, Arundhati Nag, Suresh Pitram, Rosemary Rohde, James R Heath.   

Abstract

Advances in the fields of proteomics, molecular imaging, and therapeutics are closely linked to the availability of affinity reagents that selectively recognize their biological targets. Here we present a review of Iterative Peptide In Situ Click Chemistry (IPISC), a novel screening technology for designing peptide multiligands with high affinity and specificity. This technology builds upon in situ click chemistry, a kinetic target-guided synthesis approach where the protein target catalyzes the conjugation of two small molecules, typically through the azide-alkyne Huisgen cycloaddition. Integrating this methodology with solid phase peptide libraries enables the assembly of linear and branched peptide multiligands we refer to as Protein Catalyzed Capture Agents (PCC Agents). The resulting structures can be thought of as analogous to the antigen recognition site of antibodies and serve as antibody replacements in biochemical and cell-based applications. In this review, we discuss the recent progress in ligand design through IPISC and related approaches, focusing on the improvements in affinity and specificity as multiligands are assembled by target-catalyzed peptide conjugation. We compare the IPISC process to small molecule in situ click chemistry with particular emphasis on the advantages and technical challenges of constructing antibody-like PCC Agents.

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Year:  2013        PMID: 22836343      PMCID: PMC3716466          DOI: 10.1039/c2ib20110k

Source DB:  PubMed          Journal:  Integr Biol (Camb)        ISSN: 1757-9694            Impact factor:   2.192


  51 in total

1.  Generation of sequence-specific, high affinity anti-DNA antibodies.

Authors:  M L Cerutti; J M Centeno; F A Goldbaum; G de Prat-Gay
Journal:  J Biol Chem       Date:  2001-01-22       Impact factor: 5.157

2.  Rationally designed anti-HER2/neu peptide mimetic disables P185HER2/neu tyrosine kinases in vitro and in vivo.

Authors:  B W Park; H T Zhang; C Wu; A Berezov; X Zhang; R Dua; Q Wang; G Kao; D M O'Rourke; M I Greene; R Murali
Journal:  Nat Biotechnol       Date:  2000-02       Impact factor: 54.908

3.  Destabilizing universal linkers for signal amplification in self-ligating probes for RNA.

Authors:  Hiroshi Abe; Eric T Kool
Journal:  J Am Chem Soc       Date:  2004-11-03       Impact factor: 15.419

4.  Inhibitors of HIV-1 protease by using in situ click chemistry.

Authors:  Matthew Whiting; John Muldoon; Ying-Chuan Lin; Steven M Silverman; William Lindstrom; Arthur J Olson; Hartmuth C Kolb; M G Finn; K Barry Sharpless; John H Elder; Valery V Fokin
Journal:  Angew Chem Int Ed Engl       Date:  2006-02-20       Impact factor: 15.336

5.  A new type of synthetic peptide library for identifying ligand-binding activity.

Authors:  K S Lam; S E Salmon; E M Hersh; V J Hruby; W M Kazmierski; R J Knapp
Journal:  Nature       Date:  1991-11-07       Impact factor: 49.962

6.  A Conserved residue in the yeast Bem1p SH3 domain maintains the high level of binding specificity required for function.

Authors:  Maryna Gorelik; Karen Stanger; Alan R Davidson
Journal:  J Biol Chem       Date:  2011-04-12       Impact factor: 5.157

7.  The testosterone binding mechanism of an antibody derived from a naïve human scFv library.

Authors:  Merja H Niemi; Kristiina Takkinen; Lotta K Amundsen; Hans Söderlund; Juha Rouvinen; Matti Höyhtyä
Journal:  J Mol Recognit       Date:  2011 Mar-Apr       Impact factor: 2.137

8.  Conformations of the third hypervariable region in the VH domain of immunoglobulins.

Authors:  V Morea; A Tramontano; M Rustici; C Chothia; A M Lesk
Journal:  J Mol Biol       Date:  1998-01-16       Impact factor: 5.469

9.  Three-dimensional structures of the free and the antigen-complexed Fab from monoclonal anti-lysozyme antibody D44.1.

Authors:  B C Braden; H Souchon; J L Eiselé; G A Bentley; T N Bhat; J Navaza; R J Poljak
Journal:  J Mol Biol       Date:  1994-11-04       Impact factor: 5.469

10.  Expressed murine and human CDR-H3 intervals of equal length exhibit distinct repertoires that differ in their amino acid composition and predicted range of structures.

Authors:  Michael Zemlin; Martin Klinger; Jason Link; Cosima Zemlin; Karl Bauer; Jeffrey A Engler; Harry W Schroeder; Perry M Kirkham
Journal:  J Mol Biol       Date:  2003-12-05       Impact factor: 5.469

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  6 in total

1.  A General Synthetic Approach for Designing Epitope Targeted Macrocyclic Peptide Ligands.

Authors:  Samir Das; Arundhati Nag; JingXin Liang; David N Bunck; Aiko Umeda; Blake Farrow; Matthew B Coppock; Deborah A Sarkes; Amethist S Finch; Heather D Agnew; Suresh Pitram; Bert Lai; Mary Beth Yu; A Katrine Museth; Kaycie M Deyle; Bianca Lepe; Frances P Rodriguez-Rivera; Amy McCarthy; Belen Alvarez-Villalonga; Ann Chen; John Heath; Dimitra N Stratis-Cullum; James R Heath
Journal:  Angew Chem Int Ed Engl       Date:  2015-09-17       Impact factor: 15.336

2.  Exploitation of the Ornithine Effect Enhances Characterization of Stapled and Cyclic Peptides.

Authors:  Christopher M Crittenden; W Ryan Parker; Zachary B Jenner; Kerry A Bruns; Lucas D Akin; William M McGee; Eugene Ciccimaro; Jennifer S Brodbelt
Journal:  J Am Soc Mass Spectrom       Date:  2016-02-10       Impact factor: 3.109

Review 3.  The Human Eye Proteome Project: perspectives on an emerging proteome.

Authors:  Richard D Semba; Jan J Enghild; Vidya Venkatraman; Thomas F Dyrlund; Jennifer E Van Eyk
Journal:  Proteomics       Date:  2013-08       Impact factor: 3.984

4.  Diversity Oriented Clicking (DOC): Divergent Synthesis of SuFExable Pharmacophores from 2-Substituted-Alkynyl-1-Sulfonyl Fluoride (SASF) Hubs.

Authors:  Christopher J Smedley; Gencheng Li; Andrew S Barrow; Timothy L Gialelis; Marie-Claire Giel; Alessandra Ottonello; Yunfei Cheng; Seiya Kitamura; Dennis W Wolan; K Barry Sharpless; John E Moses
Journal:  Angew Chem Int Ed Engl       Date:  2020-06-04       Impact factor: 15.336

5.  A protein-targeting strategy used to develop a selective inhibitor of the E17K point mutation in the PH domain of Akt1.

Authors:  Kaycie M Deyle; Blake Farrow; Ying Qiao Hee; Jeremy Work; Michelle Wong; Bert Lai; Aiko Umeda; Steven W Millward; Arundhati Nag; Samir Das; James R Heath
Journal:  Nat Chem       Date:  2015-04-13       Impact factor: 24.427

6.  Gold nanoparticle-based rapid detection and isolation of cells using ligand-receptor chemistry.

Authors:  Pradipta Ranjan Rauta; Pavan M Hallur; Aditya Chaubey
Journal:  Sci Rep       Date:  2018-02-13       Impact factor: 4.379

  6 in total

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