| Literature DB >> 20043861 |
Gao Gao1, Zhen-Lin Zhang, Jin-Wei He, Hao Zhang, Hua Yue, Wei-Wei Hu, Jie-Mei Gu, Wen-Zhen Fu, Yun-Qiu Hu, Miao Li, Yu-Juan Liu, Jin-Bo Yu.
Abstract
BACKGROUND: The Wnt/beta-catenin signaling pathway plays an important role in skeletal development. Polymorphisms of frizzled-related protein (FRZB), an antagonist of this pathway, may generate variations in bone mineral density (BMD). In this study, we analyzed the association between FRZB genotypes and peak BMD variation in the spines and hips of two relatively large samples of Chinese female-offspring and male-offspring nuclear families.Entities:
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Year: 2010 PMID: 20043861 PMCID: PMC2806249 DOI: 10.1186/1471-2350-11-1
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Information and the primer and probe sequences for the studied SNPs in the FRZB gene
| dbSNP | Polymorphism | Domain | primer sequence 5'-3' | TaqMan probe sequence |
|---|---|---|---|---|
| rs6433993 | A/G | intron 1 | F: CTGCTGAAATTAACATACCTGACCTGGATTT | |
| rs409238 | A/G | intron 2 | F: TCTGGAGCACCTTTGGAACAG | VIC-CGCCAAGAACAGGTT |
| rs288324 | A/G | intron 5 | F: CTTGAAATGCATCTCCCTTTTGACA | VIC-TCTTCTCCCCTTTAGTAGAT |
| rs4666865 | A/G | 3'near gene | F: TGGTTCTACTAATAGCACACATGTAAATGG | VIC-CAGAGAATGAAACTTT |
The rs6433993 was genotyped by polymerase chain reaction and restriction fragment length polymorphism (PCR-RFLP) and did not use a TaqMan probe
Basic characterstics of the study subjects
| Female-offspring nuclear familiesa | Male-offspring nuclear familiesb | |||||
|---|---|---|---|---|---|---|
| Father | Mother | Daughter | Father | Mother | Son | |
| n | 401 | 401 | 458 | 400 | 400 | 415 |
| Age (years) | 62.4 ± 6.6 | 62.4 ± 6.6 | 31.4 ± 5.8 | 61.1 ± 7.1 | 58.4 ± 6.3 | 30.4 ± 6.1 |
| Height (cm) | 165.7 ± 10.4 | 154.6 ± 5.6 | 159.8 ± 5.1 | 167.7 ± 6.1 | 155.9 ± 5.4 | 172.9 ± 5.9 |
| Weight (kg) | 68.3 ± 10.6 | 59.2 ± 8.6 | 55.0 ± 8.0 | 69.7 ± 9.5 | 58.3 ± 8.3 | 70.7 ± 10.8 |
| Lumbar spine BMD (g/cm2) | 0.930 ± 0.149 | 0.813 ± 0.151 | 0.960 ± 0.102 | 1.138 ± 0.171 | 0.994 ± 0.170 | 1.138 ± 0.137 |
| Total hip BMD (g/cm2) | 0.875 ± 0.123 | 0.749 ± 0.134 | 0.854 ± 0.108 | 0.966 ± 0.130 | 0.869 ± 0.149 | 1.015 ± 0.137 |
| Femoral neck BMD (g/cm2) | 0.750 ± 0.115 | 0.677 ± 0.122 | 0.776 ± 0.108 | 0.891 ± 0.132 | 0.797 ± 0.144 | 0.998 ± 0.143 |
All data are presented as mean ± SD for the raw phenotype values without adjustment.
a Female-offspring families were measured by DXA on a Hologic QDR 2000.
b Male-offspring families were measured by DXA on a Lunar Prodigy
Frequencies of selected FRZB polymorphism in the Chinese population
| dbSNP | Genotype | Parents in female-offspring nuclear families (n = 802) | Parents in male-offspring nuclear families (n = 800) | All parents (n = 1602) | MAF (%) |
|---|---|---|---|---|---|
| rs6433993 | AA | 243(0.303) | 205(0.256) | 448(0.280) | 46.8 |
| AG | 405(0.505) | 403(0.504) | 808(0.504) | ||
| GG | 154(0.192) | 192(0.240) | 346(0.216) | ||
| rs409238 | AA | 170(0.212) | 133(0.166) | 303(0.189) | 44.6 |
| AG | 414(0.516) | 411(0.514) | 825(0.515) | ||
| GG | 218(0.272) | 256(0.320) | 474(0.296) | ||
| rs288324 | AA | 169(0.211) | 140(0.175) | 309(0.193) | 44.3 |
| AG | 392(0.489) | 409(0.511) | 801(0.500) | ||
| GG | 241(0.300) | 251(0.314) | 492(0.307) | ||
| rs4666865 | AA | 559(0.697) | 558(0.697) | 1117(0.697) | 16.2 |
| AG | 229(0.286) | 224(0.280) | 453(0.283) | ||
| GG | 14(0.017) | 18(0.023) | 32(0.020) |
MAF minor allele frequency
MAFs of each SNP are calculated from all of the parents of the nuclear families
Figure 1Linkage disequilibrium (LD) patterns and haplotype frequencies for the . Block structures depicted by Haploview. The increasing degree of darkness of the cells from white to black represents the increasing strength of LD. The values in the cells are the pair-wise degrees of LD indicated by D' × 100 when D' < 1. In the figure, 1 to 4 represent rs6433993 rs409238 rs288324 and rs4666865 respectively. The haplotype frequency is denoted beside each corresponding haplotype and calculated from unrelated parents (n = 1602). a LD pattern for the FRZB gene. b Haplotype frequencies for the FRZB gene.
P values of QTDT analyses for FRZB gene and BMD in female-offspring nuclear families
| rs6433993 | rs409238 | rs288324 | rs4666865 | |
|---|---|---|---|---|
| Tests of population stratification | ||||
| Lumbar spine BMD | 0.2597 | 0.7082 | 0.7210 | 0.6797 |
| Total hip BMD | 0.1201 | 0.4474 | 0.6278 | 0.3498 |
| Femoral neck BMD | 0.9553 | 0.5299 | 0.8853 | 0.5387 |
| Test of total association | ||||
| Lumbar spine BMD | 0.5910 | 0.9239 | 0.8353 | 0.3077 |
| Total hip BMD | 0.7237 | 0.6503 | 0.2945 | 0.7763 |
| Femoral neck BMD | 0.4555 | 0.2779 | 0.1819 | 0.9844 |
| Test of within-family association | ||||
| Lumbar spine BMD | 0.5047 | 0.7121 | 0.8470 | 0.8338 |
| Total hip BMD | 0.1345 | 0.3765 | 0.3300 | 0.5350 |
| Femoral neck BMD | 0.6584 | 0.9779 | 0.5681 | 0.6117 |
| Lumbar spine BMD | 0.3950 | 0.6670 | 0.7830 | 0.8090 |
| Total hip BMD | 0.1110 | 0.3520 | 0.2680 | 0.5170 |
| Femoral neck BMD | 0.6440 | 0.9780 | 0.5990 | 0.6650 |
BMD values are adjusted for age, height, and weight
P values of QTDT analyses for FRZB gene and BMD in male-offspring nuclear families
| rs6433993 | rs409238 | rs288324 | rs4666865 | |
|---|---|---|---|---|
| Tests of population stratification | ||||
| Lumbar spine BMD | 0.5236 | 0.7656 | 0.6731 | 0.8238 |
| Total hip BMD | 0.7361 | 0.6912 | 0.9392 | 0.8309 |
| Femoral neck BMD | 0.8698 | 0.7332 | 0.8995 | 1.0000 |
| Test of total association | ||||
| Lumbar spine BMD | 0.5978 | 0.2937 | 0.2672 | |
| Total hip BMD | 0.5233 | 0.6343 | 0.7110 | 0.1164 |
| Femoral neck BMD | 0.8093 | 0.8872 | 0.7740 | 0.2963 |
| Test of within-family association | ||||
| Lumbar spine BMD | 0.4155 | 0.4277 | 0.3610 | 0.3712 |
| Total hip BMD | 0.9793 | 0.9271 | 0.8014 | 0.5332 |
| Femoral neck BMD | 0.9752 | 0.7143 | 0.8034 | 0.6109 |
| Lumbar spine BMD | 0.3860 | 0.3700 | 0.3680 | 0.2780 |
| Total hip BMD | 0.9740 | 0.7350 | 0.8280 | 0.6520 |
| Femoral neck BMD | 0.9800 | 0.9290 | 0.8310 | 0.5290 |
BMD values are adjusted for age, height and weight. Bold indicates significant p values (p < 0.05)