Literature DB >> 2004280

MetaModel: a program for modelling and control analysis of metabolic pathways on the IBM PC and compatibles.

A Cornish-Bowden1, J H Hofmeyr.   

Abstract

MetaModel is a user-friendly program for calculating steady-state fluxes and metabolite concentrations of metabolic systems on the IBM PC and compatible computers. For any steady state that is obtained, one can then calculate a matrix of elasticity coefficients at that steady state, or a matrix of control and response coefficients. It thus offers a simple way to calculate the control structure of a pathway: it provides not only an educational tool that allows the student to verify empirically the classic summation relationships of metabolic control analysis but also a research tool for addressing 'what if?' questions about the behaviour of metabolic systems. Results can not only be printed or stored in a file, but can also be written to a special file that can be read by popular spreadsheet programs, thereby giving access to rapid, flexible and powerful methods for subsequent analysis and plotting of these results.

Mesh:

Year:  1991        PMID: 2004280     DOI: 10.1093/bioinformatics/7.1.89

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  9 in total

Review 1.  Metabolic control analysis: a survey of its theoretical and experimental development.

Authors:  D A Fell
Journal:  Biochem J       Date:  1992-09-01       Impact factor: 3.857

Review 2.  Metabolic regulation: a control analytic perspective.

Authors:  J H Hofmeyr
Journal:  J Bioenerg Biomembr       Date:  1995-10       Impact factor: 2.945

3.  A computer program for the algebraic determination of control coefficients in Metabolic Control Analysis.

Authors:  S Thomas; D A Fell
Journal:  Biochem J       Date:  1993-06-01       Impact factor: 3.857

4.  Quantitative determination of the steady-state kinetics of multienzyme reactions using the algebraic rate equations for the component single-enzyme reactions.

Authors:  C D Stoner
Journal:  Biochem J       Date:  1993-04-15       Impact factor: 3.857

5.  Determination of control coefficients in intact metabolic systems.

Authors:  A Cornish-Bowden; J H Hofmeyr
Journal:  Biochem J       Date:  1994-03-01       Impact factor: 3.857

6.  A quantitative analysis of the control of glutamine catabolism in rat liver cells. Use of selective inhibitors.

Authors:  S Y Low; M Salter; R G Knowles; C I Pogson; M J Rennie
Journal:  Biochem J       Date:  1993-10-15       Impact factor: 3.857

7.  In silico models for dynamic connected cell cultures mimicking hepatocyte-endothelial cell-adipocyte interaction circle.

Authors:  Chiara Andreoni; Gianni Orsi; Carmelo De Maria; Francesca Montemurro; Giovanni Vozzi
Journal:  PLoS One       Date:  2014-12-15       Impact factor: 3.240

Review 8.  Metabolic control analysis: a tool for designing strategies to manipulate metabolic pathways.

Authors:  Rafael Moreno-Sánchez; Emma Saavedra; Sara Rodríguez-Enríquez; Viridiana Olín-Sandoval
Journal:  J Biomed Biotechnol       Date:  2008

9.  Computer-Aided Whole-Cell Design: Taking a Holistic Approach by Integrating Synthetic With Systems Biology.

Authors:  Lucia Marucci; Matteo Barberis; Jonathan Karr; Oliver Ray; Paul R Race; Miguel de Souza Andrade; Claire Grierson; Stefan Andreas Hoffmann; Sophie Landon; Elibio Rech; Joshua Rees-Garbutt; Richard Seabrook; William Shaw; Christopher Woods
Journal:  Front Bioeng Biotechnol       Date:  2020-08-07
  9 in total

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