Literature DB >> 20034501

The basic reproductive ratio of life.

Michael L Manapat1, Irene A Chen, Martin A Nowak.   

Abstract

Template-directed polymerization of nucleotides is believed to be a pathway for the replication of genetic material in the earliest cells. We assume that activated monomers are produced by prebiotic chemistry. These monomers can undergo spontaneous polymerization, a system that we call "prelife." Adding template-directed polymerization changes the equilibrium structure of prelife if the rate constants meet certain criteria. In particular, if the basic reproductive ratio of sequences of a certain length exceeds one, then those sequences can attain high abundance. Furthermore, if many sequences replicate, then the longest sequences can reach high abundance even if the basic reproductive ratios of all sequences are less than one. We call this phenomenon "subcritical life." Subcritical life suggests that sequences long enough to be ribozymes can become abundant even if replication is relatively inefficient. Our work on the evolution of replication has interesting parallels to infection dynamics. Life (replication) can be seen as an infection of prelife. Copyright 2009 Elsevier Ltd. All rights reserved.

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Year:  2009        PMID: 20034501      PMCID: PMC2827768          DOI: 10.1016/j.jtbi.2009.12.020

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  63 in total

1.  Polyphosphorylation and non-enzymatic template-directed ligation of oligonucleotides.

Authors:  K Gao; L E Orgel
Journal:  Orig Life Evol Biosph       Date:  2000-02       Impact factor: 1.950

2.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

3.  In vitro selection of RNAs that undergo autolytic cleavage with Pb2+.

Authors:  T Pan; O C Uhlenbeck
Journal:  Biochemistry       Date:  1992-04-28       Impact factor: 3.162

4.  Prevolutionary dynamics and the origin of evolution.

Authors:  Martin A Nowak; Hisashi Ohtsuki
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-12       Impact factor: 11.205

5.  Efficient metal-ion catalyzed template-directed oligonucleotide synthesis.

Authors:  R Lohrmann; P K Bridson; L E Orgel
Journal:  Science       Date:  1980-06-27       Impact factor: 47.728

6.  Group selection of early replicators and the origin of life.

Authors:  E Szathmáry; L Demeter
Journal:  J Theor Biol       Date:  1987-10-21       Impact factor: 2.691

7.  The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle.

Authors:  M Eigen; P Schuster
Journal:  Naturwissenschaften       Date:  1977-11

8.  Self-replication of complementary nucleotide-based oligomers.

Authors:  D Sievers; G von Kiedrowski
Journal:  Nature       Date:  1994-05-19       Impact factor: 49.962

9.  Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

Authors:  Matthew W Powner; Béatrice Gerland; John D Sutherland
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

10.  Heteropolynucleotides as templates for non-enzymatic polymerizations.

Authors:  J Ninio; L E Orgel
Journal:  J Mol Evol       Date:  1978-12-29       Impact factor: 2.395

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  8 in total

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Journal:  Commun Integr Biol       Date:  2011-09-01

Review 2.  The RNA World: molecular cooperation at the origins of life.

Authors:  Paul G Higgs; Niles Lehman
Journal:  Nat Rev Genet       Date:  2014-11-11       Impact factor: 53.242

3.  From prelife to life: how chemical kinetics become evolutionary dynamics.

Authors:  Irene A Chen; Martin A Nowak
Journal:  Acc Chem Res       Date:  2012-02-15       Impact factor: 22.384

4.  Universal sequence replication, reversible polymerization and early functional biopolymers: a model for the initiation of prebiotic sequence evolution.

Authors:  Sara Imari Walker; Martha A Grover; Nicholas V Hud
Journal:  PLoS One       Date:  2012-04-06       Impact factor: 3.240

5.  Prebiotically plausible mechanisms increase compositional diversity of nucleic acid sequences.

Authors:  Julien Derr; Michael L Manapat; Sudha Rajamani; Kevin Leu; Ramon Xulvi-Brunet; Isaac Joseph; Martin A Nowak; Irene A Chen
Journal:  Nucleic Acids Res       Date:  2012-02-07       Impact factor: 16.971

6.  Co-operation between Polymerases and Nucleotide Synthetases in the RNA World.

Authors:  Ye Eun Kim; Paul G Higgs
Journal:  PLoS Comput Biol       Date:  2016-11-07       Impact factor: 4.475

7.  Thermodynamic and Kinetic Sequence Selection in Enzyme-Free Polymer Self-Assembly inside a Non-equilibrium RNA Reactor.

Authors:  Tobias Göppel; Joachim H Rosenberger; Bernhard Altaner; Ulrich Gerland
Journal:  Life (Basel)       Date:  2022-04-10

8.  The origin of life is a spatially localized stochastic transition.

Authors:  Meng Wu; Paul G Higgs
Journal:  Biol Direct       Date:  2012-11-24       Impact factor: 4.540

  8 in total

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