Literature DB >> 20016879

Use of pJANUS-02-001 as a calibrator plasmid for Roundup Ready soybean event GTS-40-3-2 detection: an interlaboratory trial assessment.

A Lievens1, G Bellocchi, D De Bernardi, W Moens, C Savini, M Mazzara, G Van den Eede, M Van den Bulcke.   

Abstract

Owing to the labelling requirements of food and feed products containing materials derived from genetically modified organisms, quantitative detection methods have to be developed for this purpose, including the necessary certified reference materials and calibrator standards. To date, for most genetically modified organisms authorized in the European Union, certified reference materials derived from seed powders are being developed. Here, an assessment has been made on the feasibility of using plasmid DNA as an alternative calibrator for the quantitative detection of genetically modified organisms. For this, a dual-target plasmid, designated as pJANUS-02-001, comprising part of a junction region of genetically modified soybean event GTS-40-3-2 and the endogenous soybean-specific lectin gene was constructed. The dynamic range, efficiency and limit of detection for the soybean event GTS-40-3-2 real-time quantitative polymerase chain reaction (Q-PCR) system described by Terry et al. (J AOAC Int 85(4):938-944, 2002) were shown to be similar for in house produced homozygous genomic DNA from leaf tissue of soybean event GTS-40-3-2 and for plasmid pJANUS-02-001 DNA backgrounds. The performance of this real-time Q-PCR system using both types of DNA templates as calibrator standards in quantitative DNA analysis was further assessed in an interlaboratory trial. Statistical analysis and fuzzy-logic-based interpretation were performed on critical method parameters (as defined by the European Network of GMO Laboratories and the Community Reference Laboratory for GM Food and Feed guidelines) and demonstrated that the plasmid pJANUS-02-001 DNA represents a valuable alternative to genomic DNA as a calibrator for the quantification of soybean event GTS-40-3-2 in food and feed products.

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Year:  2009        PMID: 20016879      PMCID: PMC2836459          DOI: 10.1007/s00216-009-3346-z

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.142


  14 in total

1.  Determination of percentage of RoundUp Ready soya in soya flour using real-time polymerase chain reaction: interlaboratory study.

Authors:  Heather Hird; Joanne Powell; Mari-Louise Johnson; Sarah Oehlschlager
Journal:  J AOAC Int       Date:  2003 Jan-Feb       Impact factor: 1.913

2.  Real-time detection of genetically modified soya using Lightcycler and ABI 7700 platforms with TaqMan, Scorpion, and SYBR Green I chemistries.

Authors:  Catherine F Terry; Della J Shanahan; Lydia D Ballam; Neil Harris; David G McDowell; Helen C Parkes
Journal:  J AOAC Int       Date:  2002 Jul-Aug       Impact factor: 1.913

3.  State of the art and limitations of quantitative polymerase chain reaction.

Authors:  Gordon Wiseman
Journal:  J AOAC Int       Date:  2002 May-Jun       Impact factor: 1.913

4.  Cloned plasmid DNA fragments as calibrators for controlling GMOs: different real-time duplex quantitative PCR methods.

Authors:  Isabel Taverniers; Erik Van Bockstaele; Marc De Loose
Journal:  Anal Bioanal Chem       Date:  2003-12-20       Impact factor: 4.142

Review 5.  The modular analytical procedure and validation approach and the units of measurement for genetically modified materials in foods and feeds.

Authors:  Arne Holst-Jensen; Knut G Berdal
Journal:  J AOAC Int       Date:  2004 Jul-Aug       Impact factor: 1.913

6.  Use of cloned DNA fragments as reference materials for event specific quantification of genetically modified organisms (GMOs).

Authors:  I Taverniers; E Van Bockstaele; M De Loose
Journal:  Meded Rijksuniv Gent Fak Landbouwkd Toegep Biol Wet       Date:  2001

7.  Toward metrological traceability for DNA fragment ratios in GM quantification. 3. Suitability of DNA calibrants studied with a MON 810 corn model.

Authors:  Diana Charels; Sylvia Broeders; Philippe Corbisier; Stefanie Trapmann; Heinz Schimmel; Hendrik Emons
Journal:  J Agric Food Chem       Date:  2007-04-04       Impact factor: 5.279

8.  Analytical Method Performance Evaluation (AMPE)--a software tool for analytical method validation.

Authors:  Marco Acutis; Patrizia Trevisiol; Roberto Confalonieri; Gianni Bellocchi; Emanuele Grazioli; Guy Van den Eede; Claudia Paoletti
Journal:  J AOAC Int       Date:  2007 Sep-Oct       Impact factor: 1.913

9.  Effects of DNA extraction and purification methods on real-time quantitative PCR analysis of Roundup Ready soybean.

Authors:  Tigst Demeke; Indira Ratnayaka; Anh Phan
Journal:  J AOAC Int       Date:  2009 Jul-Aug       Impact factor: 1.913

10.  Determination of PCR efficiency in chelex-100 purified clinical samples and comparison of real-time quantitative PCR and conventional PCR for detection of Chlamydia pneumoniae.

Authors:  Tina Mygind; Svend Birkelund; Niels H Birkebaek; Lars Østergaard; Jørgen Skov Jensen; Gunna Christiansen
Journal:  BMC Microbiol       Date:  2002-07-09       Impact factor: 3.605

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  1 in total

Review 1.  Relative quantification in seed GMO analysis: state of art and bottlenecks.

Authors:  Maher Chaouachi; Aurélie Bérard; Khaled Saïd
Journal:  Transgenic Res       Date:  2013-02-12       Impact factor: 2.788

  1 in total

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