Literature DB >> 20016484

Three-dimensional structure determination from a single view.

Kevin S Raines1, Sara Salha, Richard L Sandberg, Huaidong Jiang, Jose A Rodríguez, Benjamin P Fahimian, Henry C Kapteyn, Jincheng Du, Jianwei Miao.   

Abstract

The ability to determine the structure of matter in three dimensions has profoundly advanced our understanding of nature. Traditionally, the most widely used schemes for three-dimensional (3D) structure determination of an object are implemented by acquiring multiple measurements over various sample orientations, as in the case of crystallography and tomography, or by scanning a series of thin sections through the sample, as in confocal microscopy. Here we present a 3D imaging modality, termed ankylography (derived from the Greek words ankylos meaning 'curved' and graphein meaning 'writing'), which under certain circumstances enables complete 3D structure determination from a single exposure using a monochromatic incident beam. We demonstrate that when the diffraction pattern of a finite object is sampled at a sufficiently fine scale on the Ewald sphere, the 3D structure of the object is in principle determined by the 2D spherical pattern. We confirm the theoretical analysis by performing 3D numerical reconstructions of a sodium silicate glass structure at 2 A resolution, and a single poliovirus at 2-3 nm resolution, from 2D spherical diffraction patterns alone. Using diffraction data from a soft X-ray laser, we also provide a preliminary demonstration that ankylography is experimentally feasible by obtaining a 3D image of a test object from a single 2D diffraction pattern. With further development, this approach of obtaining complete 3D structure information from a single view could find broad applications in the physical and life sciences.

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Year:  2009        PMID: 20016484     DOI: 10.1038/nature08705

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  20 in total

1.  Reconstruction of the shapes of gold nanocrystals using coherent x-ray diffraction.

Authors:  I K Robinson; I A Vartanyants; G J Williams; M A Pfeifer; J A Pitney
Journal:  Phys Rev Lett       Date:  2001-10-19       Impact factor: 9.161

2.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

3.  Atomic resolution imaging of a carbon nanotube from diffraction intensities.

Authors:  J M Zuo; I Vartanyants; M Gao; R Zhang; L A Nagahara
Journal:  Science       Date:  2003-05-30       Impact factor: 47.728

4.  Imaging whole Escherichia coli bacteria by using single-particle x-ray diffraction.

Authors:  Jianwei Miao; Keith O Hodgson; Tetsuya Ishikawa; Carolyn A Larabell; Mark A LeGros; Yoshinori Nishino
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-23       Impact factor: 11.205

5.  High-resolution ab initio three-dimensional x-ray diffraction microscopy.

Authors:  Henry N Chapman; Anton Barty; Stefano Marchesini; Aleksandr Noy; Stefan P Hau-Riege; Congwu Cui; Malcolm R Howells; Rachel Rosen; Haifeng He; John C H Spence; Uwe Weierstall; Tobias Beetz; Chris Jacobsen; David Shapiro
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2006-05       Impact factor: 2.129

6.  Fresnel coherent diffractive imaging.

Authors:  G J Williams; H M Quiney; B B Dhal; C Q Tran; K A Nugent; A G Peele; D Paterson; M D de Jonge
Journal:  Phys Rev Lett       Date:  2006-07-14       Impact factor: 9.161

7.  High numerical aperture tabletop soft x-ray diffraction microscopy with 70-nm resolution.

Authors:  Richard L Sandberg; Changyong Song; Przemyslaw W Wachulak; Daisy A Raymondson; Ariel Paul; Bagrat Amirbekian; Edwin Lee; Anne E Sakdinawat; Chan La-O-Vorakiat; Mario C Marconi; Carmen S Menoni; Margaret M Murnane; Jorge J Rocca; Henry C Kapteyn; Jianwei Miao
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-27       Impact factor: 11.205

8.  High-resolution scanning x-ray diffraction microscopy.

Authors:  Pierre Thibault; Martin Dierolf; Andreas Menzel; Oliver Bunk; Christian David; Franz Pfeiffer
Journal:  Science       Date:  2008-07-18       Impact factor: 47.728

9.  Quantitative imaging of single, unstained viruses with coherent x rays.

Authors:  Changyong Song; Huaidong Jiang; Adrian Mancuso; Bagrat Amirbekian; Li Peng; Ren Sun; Sanket S Shah; Z Hong Zhou; Tetsuya Ishikawa; Jianwei Miao
Journal:  Phys Rev Lett       Date:  2008-10-07       Impact factor: 9.161

10.  The structure of the poliovirus 135S cell entry intermediate at 10-angstrom resolution reveals the location of an externalized polypeptide that binds to membranes.

Authors:  Doryen Bubeck; David J Filman; Naiqian Cheng; Alasdair C Steven; James M Hogle; David M Belnap
Journal:  J Virol       Date:  2005-06       Impact factor: 5.103

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  23 in total

1.  Three-dimensional technique on trial.

Authors:  Eugenie Samuel Reich
Journal:  Nature       Date:  2011-12-14       Impact factor: 49.962

2.  Fundamental limits of 'ankylography' due to dimensional deficiency.

Authors:  Haiqing Wei
Journal:  Nature       Date:  2011-11-30       Impact factor: 49.962

3.  Non-uniqueness and instability of 'ankylography'.

Authors:  Ge Wang; Hengyong Yu; Wenxiang Cong; Alexander Katsevich
Journal:  Nature       Date:  2011-11-30       Impact factor: 49.962

4.  Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy.

Authors:  Huaidong Jiang; Changyong Song; Chien-Chun Chen; Rui Xu; Kevin S Raines; Benjamin P Fahimian; Chien-Hung Lu; Ting-Kuo Lee; Akio Nakashima; Jun Urano; Tetsuya Ishikawa; Fuyuhiko Tamanoi; Jianwei Miao
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-04       Impact factor: 11.205

5.  Fluorescent coherent diffractive imaging with accelerating light sheets.

Authors:  Jeffrey J Field; Jeff A Squier; Randy A Bartels
Journal:  Opt Express       Date:  2019-04-29       Impact factor: 3.894

6.  High-resolution three-dimensional structural microscopy by single-angle Bragg ptychography.

Authors:  S O Hruszkewycz; M Allain; M V Holt; C E Murray; J R Holt; P H Fuoss; V Chamard
Journal:  Nat Mater       Date:  2016-11-21       Impact factor: 43.841

7.  Radiation dose reduction in medical x-ray CT via Fourier-based iterative reconstruction.

Authors:  Benjamin P Fahimian; Yunzhe Zhao; Zhifeng Huang; Russell Fung; Yu Mao; Chun Zhu; Maryam Khatonabadi; John J DeMarco; Stanley J Osher; Michael F McNitt-Gray; Jianwei Miao
Journal:  Med Phys       Date:  2013-03       Impact factor: 4.071

8.  High-resolution x-ray diffraction microscopy of specifically labeled yeast cells.

Authors:  Johanna Nelson; Xiaojing Huang; Jan Steinbrener; David Shapiro; Janos Kirz; Stefano Marchesini; Aaron M Neiman; Joshua J Turner; Chris Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

9.  Super-resolution biomolecular crystallography with low-resolution data.

Authors:  Gunnar F Schröder; Michael Levitt; Axel T Brunger
Journal:  Nature       Date:  2010-04-07       Impact factor: 49.962

10.  Oversampling smoothness: an effective algorithm for phase retrieval of noisy diffraction intensities.

Authors:  Jose A Rodriguez; Rui Xu; Chien-Chun Chen; Yunfei Zou; Jianwei Miao
Journal:  J Appl Crystallogr       Date:  2013-02-23       Impact factor: 3.304

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