Literature DB >> 20012422

Probing telomeric G-quadruplex DNA structures in cells with in vitro generated single-chain antibody fragments.

Christiane Schaffitzel1, Jan Postberg, Katrin Paeschke, Hans J Lipps.   

Abstract

Guanine-rich sequences have been shown to readily form parallel or antiparallel G-quadruplex DNA structures in vitro. All telomeric repeat sequences contain stretches of guanine residues that can form quadruplex structures. In order to demonstrate the occurrence of the quadruplex structure in vivo, we generated by ribosome display, scFv antibodies specific for quadruplex DNA structures formed by the telomeric sequence of the ciliate Stylonychia. The macronucleus of this hypotrichous ciliate contains 10(8) telomere-capped nanochromosomes and was stained with the antibody recognizing the antiparallel G-quadruplex DNA in indirect immuno-fluorescence assays. This antibody was also used as a specific probe to study the interaction of the telomere end-binding proteins with the G-quadruplex during different stages of the cell cycle.

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Year:  2010        PMID: 20012422     DOI: 10.1007/978-1-59745-363-9_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  13 in total

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Journal:  Eur J Microbiol Immunol (Bp)       Date:  2015-03-26

2.  Multivalent LKγ-PNA oligomers bind to a human telomere DNA G-rich sequence to form quadruplexes.

Authors:  Pankaj Gupta; Elizabeth E Rastede; Daniel H Appella
Journal:  Bioorg Med Chem Lett       Date:  2015-07-29       Impact factor: 2.823

3.  Repair of O6-methylguanine adducts in human telomeric G-quadruplex DNA by O6-alkylguanine-DNA alkyltransferase.

Authors:  Lance M Hellman; Tyler J Spear; Colton J Koontz; Manana Melikishvili; Michael G Fried
Journal:  Nucleic Acids Res       Date:  2014-07-30       Impact factor: 16.971

4.  Strand invasion of DNA quadruplexes by PNA: comparison of homologous and complementary hybridization.

Authors:  Anisha Gupta; Ling-Ling Lee; Subhadeep Roy; Farial A Tanious; W David Wilson; Danith H Ly; Bruce A Armitage
Journal:  Chembiochem       Date:  2013-07-19       Impact factor: 3.164

5.  DNA sequences proximal to human mitochondrial DNA deletion breakpoints prevalent in human disease form G-quadruplexes, a class of DNA structures inefficiently unwound by the mitochondrial replicative Twinkle helicase.

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Journal:  J Biol Chem       Date:  2014-09-05       Impact factor: 5.157

6.  A telomerase-associated RecQ protein-like helicase resolves telomeric G-quadruplex structures during replication.

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Journal:  Gene       Date:  2012-02-02       Impact factor: 3.688

7.  Experimental approaches to identify cellular G-quadruplex structures and functions.

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Journal:  Methods       Date:  2012-02-11       Impact factor: 3.608

Review 8.  G-quadruplexes: from guanine gels to chemotherapeutics.

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Journal:  Mol Biotechnol       Date:  2011-10       Impact factor: 2.695

9.  QuadBase2: web server for multiplexed guanine quadruplex mining and visualization.

Authors:  Parashar Dhapola; Shantanu Chowdhury
Journal:  Nucleic Acids Res       Date:  2016-05-16       Impact factor: 16.971

10.  Selective G-quadruplex DNA recognition by a new class of designed cyanines.

Authors:  Rupesh Nanjunda; Eric A Owens; Leah Mickelson; Tyler L Dost; Ekaterina M Stroeva; Hang T Huynh; Markus W Germann; Maged M Henary; W David Wilson
Journal:  Molecules       Date:  2013-11-04       Impact factor: 4.411

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