Literature DB >> 20010927

High-yield cell-free protein production from P-gel.

Nokyoung Park1, Jason S Kahn, Edward J Rice, Mark R Hartman, Hisakage Funabashi, Jianfeng Xu, Soong Ho Um, Dan Luo.   

Abstract

Cell-free systems represent a promising approach to quickly and easily produce preparative amounts of proteins. However, it is still challenging to obtain high volumetric yields (>mg ml(-1)) of proteins from the present cell-free systems. This protocol presents a cell-free protein synthesis method using a novel DNA gel that dramatically increases protein yield compared with current systems. This protein-producing gel (termed 'P-gel system' or 'P-gel'), which consists of genes as part of the gel scaffolding, can produce mg ml(-1) amounts of functional proteins. This protocol describes steps pertaining to plasmid design, fabrication of P-gel molds, formation of P-gel micropads and cell-free protein expression with an expected yield of up to 5 mg ml(-1) of functional Renilla luciferase (Rluc). This entire process can take 1-3 d, depending on the desired quantity of protein.

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Year:  2009        PMID: 20010927     DOI: 10.1038/nprot.2009.174

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  17 in total

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Authors:  Debalina Ghosh; Madhugiri Ramakanth; Anusarka Bhaumik; Nicolas Faure; Francis Rondelez; Dipankar Chatterji
Journal:  J Biochem Biophys Methods       Date:  2005-01-31

2.  Dendrimer-like DNA-based fluorescence nanobarcodes.

Authors:  Soong Ho Um; Jong Bum Lee; Sang Yeon Kwon; Yougen Li; Dan Luo
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

Review 3.  Rational design of DNA nanoarchitectures.

Authors:  Udo Feldkamp; Christof M Niemeyer
Journal:  Angew Chem Int Ed Engl       Date:  2006-03-13       Impact factor: 15.336

4.  A cell-free protein-producing gel.

Authors:  Nokyoung Park; Soong Ho Um; Hisakage Funabashi; Jianfeng Xu; Dan Luo
Journal:  Nat Mater       Date:  2009-03-29       Impact factor: 43.841

Review 5.  Recent advances in producing and selecting functional proteins by using cell-free translation.

Authors:  L Jermutus; L A Ryabova; A Plückthun
Journal:  Curr Opin Biotechnol       Date:  1998-10       Impact factor: 9.740

6.  Regeneration of adenosine triphosphate from glycolytic intermediates for cell-free protein synthesis.

Authors:  D M Kim; J R Swartz
Journal:  Biotechnol Bioeng       Date:  2001-08-20       Impact factor: 4.530

7.  DNA-directed peptide synthesis. II. The synthesis of the alpha-fragment of the enzyme beta-galactosidase.

Authors:  J K DeVries; G Zubay
Journal:  Proc Natl Acad Sci U S A       Date:  1967-04       Impact factor: 11.205

8.  A continuous cell-free translation system capable of producing polypeptides in high yield.

Authors:  A S Spirin; V I Baranov; L A Ryabova; S Y Ovodov; Y B Alakhov
Journal:  Science       Date:  1988-11-25       Impact factor: 47.728

9.  Nanoparticle-based bio-bar codes for the ultrasensitive detection of proteins.

Authors:  Jwa-Min Nam; C Shad Thaxton; Chad A Mirkin
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

10.  Multifunctional nanoarchitectures from DNA-based ABC monomers.

Authors:  Jong B Lee; Young H Roh; Soong Ho Um; Hisakage Funabashi; Wenlong Cheng; Judy J Cha; Pichamon Kiatwuthinon; David A Muller; Dan Luo
Journal:  Nat Nanotechnol       Date:  2009-05-03       Impact factor: 39.213

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  10 in total

Review 1.  Design properties of hydrogel tissue-engineering scaffolds.

Authors:  Junmin Zhu; Roger E Marchant
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2.  DNA hydrogel-based supercapacitors operating in physiological fluids.

Authors:  Jaehyun Hur; Kyuhyun Im; Sekyu Hwang; ByoungLyong Choi; Sungjee Kim; Sungwoo Hwang; Nokyoung Park; Kinam Kim
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

3.  Cell-free protein expression under macromolecular crowding conditions.

Authors:  Xumeng Ge; Dan Luo; Jianfeng Xu
Journal:  PLoS One       Date:  2011-12-08       Impact factor: 3.240

4.  DNA-directed self-assembly of shape-controlled hydrogels.

Authors:  Hao Qi; Majid Ghodousi; Yanan Du; Casey Grun; Hojae Bae; Peng Yin; Ali Khademhosseini
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

Review 5.  Biological Materials: The Next Frontier for Cell-Free Synthetic Biology.

Authors:  Richard J R Kelwick; Alexander J Webb; Paul S Freemont
Journal:  Front Bioeng Biotechnol       Date:  2020-05-12

6.  Cation-Responsive and Photocleavable Hydrogels from Noncanonical Amphiphilic DNA Nanostructures.

Authors:  Giacomo Fabrini; Aisling Minard; Ryan A Brady; Marco Di Antonio; Lorenzo Di Michele
Journal:  Nano Lett       Date:  2022-01-13       Impact factor: 11.189

7.  Robust analysis of synthetic label-free DNA junctions in solution by X-ray scattering and molecular simulation.

Authors:  Kyuhyun Im; Daun Jeong; Jaehyun Hur; Sung-Jin Kim; Sungwoo Hwang; Kyeong Sik Jin; Nokyoung Park; Kinam Kim
Journal:  Sci Rep       Date:  2013-11-15       Impact factor: 4.379

Review 8.  Bottom-Up Construction of Complex Biomolecular Systems With Cell-Free Synthetic Biology.

Authors:  Nadanai Laohakunakorn; Laura Grasemann; Barbora Lavickova; Grégoire Michielin; Amir Shahein; Zoe Swank; Sebastian J Maerkl
Journal:  Front Bioeng Biotechnol       Date:  2020-03-24

Review 9.  Hybrid material of structural DNA with inorganic compound: synthesis, applications, and perspective.

Authors:  Seung Won Shin; Ji Soo Yuk; Sang Hun Chun; Yong Taik Lim; Soong Ho Um
Journal:  Nano Converg       Date:  2020-01-06

Review 10.  DNA Transformations for Diagnosis and Therapy.

Authors:  So Yeon Ahn; Jin Liu; Srivithya Vellampatti; Yuzhou Wu; Soong Ho Um
Journal:  Adv Funct Mater       Date:  2020-12-27       Impact factor: 19.924

  10 in total

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