Literature DB >> 20008064

Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2.

Hidehiro Toh1, Kenshiro Oshima, Atsushi Toyoda, Yoshitoshi Ogura, Tadasuke Ooka, Hiroyuki Sasamoto, Sang-Hee Park, Sunao Iyoda, Ken Kurokawa, Hidetoshi Morita, Kikuji Itoh, Todd D Taylor, Tetsuya Hayashi, Masahira Hattori.   

Abstract

Escherichia coli SE15 (O150:H5) is a human commensal bacterium recently isolated from feces of a healthy adult and classified into E. coli phylogenetic group B2, which includes the majority of extraintestinal pathogenic E. coli. Here, we report the finished and annotated genome sequence of this organism.

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Year:  2009        PMID： 20008064      PMCID： PMC2812965          DOI： 10.1128/JB.01543-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

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Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

3.  Escherichia coli induces DNA double-strand breaks in eukaryotic cells.

Authors:  Jean-Philippe Nougayrède; Stefan Homburg; Frédéric Taieb; Michèle Boury; Elzbieta Brzuszkiewicz; Gerhard Gottschalk; Carmen Buchrieser; Jörg Hacker; Ulrich Dobrindt; Eric Oswald
Journal:  Science       Date:  2006-08-11       Impact factor: 47.728

4.  Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli.

Authors:  Amanda L Lloyd; David A Rasko; Harry L T Mobley
Journal:  J Bacteriol       Date:  2007-03-09       Impact factor: 3.490

5.  Automated finishing with autofinish.

Authors:  D Gordon; C Desmarais; P Green
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

6.  Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains.

Authors:  Tony Le Gall; Olivier Clermont; Stéphanie Gouriou; Bertrand Picard; Xavier Nassif; Erick Denamur; Olivier Tenaillon
Journal:  Mol Biol Evol       Date:  2007-08-19       Impact factor: 16.240

7.  Pathogenic adaptation of Escherichia coli by natural variation of the FimH adhesin.

Authors:  E V Sokurenko; V Chesnokova; D E Dykhuizen; I Ofek; X R Wu; K A Krogfelt; C Struve; M A Schembri; D L Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

8.  Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult.

Authors:  Kenshiro Oshima; Hidehiro Toh; Yoshitoshi Ogura; Hiroyuki Sasamoto; Hidetoshi Morita; Sang-Hee Park; Tadasuke Ooka; Sunao Iyoda; Todd D Taylor; Tetsuya Hayashi; Kikuji Itoh; Masahira Hattori
Journal:  DNA Res       Date:  2008-10-17       Impact factor: 4.458

9.  Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Authors:  Marie Touchon; Claire Hoede; Olivier Tenaillon; Valérie Barbe; Simon Baeriswyl; Philippe Bidet; Edouard Bingen; Stéphane Bonacorsi; Christiane Bouchier; Odile Bouvet; Alexandra Calteau; Hélène Chiapello; Olivier Clermont; Stéphane Cruveiller; Antoine Danchin; Médéric Diard; Carole Dossat; Meriem El Karoui; Eric Frapy; Louis Garry; Jean Marc Ghigo; Anne Marie Gilles; James Johnson; Chantal Le Bouguénec; Mathilde Lescat; Sophie Mangenot; Vanessa Martinez-Jéhanne; Ivan Matic; Xavier Nassif; Sophie Oztas; Marie Agnès Petit; Christophe Pichon; Zoé Rouy; Claude Saint Ruf; Dominique Schneider; Jérôme Tourret; Benoit Vacherie; David Vallenet; Claudine Médigue; Eduardo P C Rocha; Erick Denamur
Journal:  PLoS Genet       Date:  2009-01-23       Impact factor: 5.917
  9 in total
  38 in total

1.  Occurrence of Clinically Important Lineages, Including the Sequence Type 131 C1-M27 Subclone, among Extended-Spectrum-β-Lactamase-Producing Escherichia coli in Wastewater.

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Journal:  Antimicrob Agents Chemother       Date:  2017-08-24       Impact factor: 5.191

2.  Population analysis and epidemiological features of inhibitor-resistant-TEM-beta-lactamase-producing Escherichia coli isolates from both community and hospital settings in Madrid, Spain.

Authors:  Oihane Martín; Aránzazu Valverde; María I Morosini; Mario Rodríguez-Domínguez; Mercedes Rodríguez-Baños; Teresa M Coque; Rafael Cantón; Rosa del Campo
Journal:  J Clin Microbiol       Date:  2010-05-05       Impact factor: 5.948

3.  Rapid and specific detection, molecular epidemiology, and experimental virulence of the O16 subgroup within Escherichia coli sequence type 131.

Authors:  James R Johnson; Olivier Clermont; Brian Johnston; Connie Clabots; Veronika Tchesnokova; Evgeni Sokurenko; Adam F Junka; Beata Maczynska; Erick Denamur
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4.  High metabolic potential may contribute to the success of ST131 uropathogenic Escherichia coli.

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5.  Genome sequence of Escherichia coli AA86, isolated from cow feces.

Authors:  Hana Yi; Yong-Joon Cho; Hor-Gil Hur; Jongsik Chun
Journal:  J Bacteriol       Date:  2011-05-20       Impact factor: 3.490

6.  Antimicrobial Peptide Conformation as a Structural Determinant of Omptin Protease Specificity.

Authors:  John R Brannon; Jenny-Lee Thomassin; Samantha Gruenheid; Hervé Le Moual
Journal:  J Bacteriol       Date:  2015-09-08       Impact factor: 3.490

7.  Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India.

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Journal:  J Bacteriol       Date:  2011-06-17       Impact factor: 3.490

Review 8.  Comparison of 61 sequenced Escherichia coli genomes.

Authors:  Oksana Lukjancenko; Trudy M Wassenaar; David W Ussery
Journal:  Microb Ecol       Date:  2010-07-11       Impact factor: 4.552

Review 9.  Bacterial serine proteases secreted by the autotransporter pathway: classification, specificity, and role in virulence.

Authors:  Fernando Ruiz-Perez; James P Nataro
Journal:  Cell Mol Life Sci       Date:  2013-05-21       Impact factor: 9.261

10.  Role of homologous recombination in adaptive diversification of extraintestinal Escherichia coli.

Authors:  Sandip Paul; Elena V Linardopoulou; Mariya Billig; Veronika Tchesnokova; Lance B Price; James R Johnson; Sujay Chattopadhyay; Evgeni V Sokurenko
Journal:  J Bacteriol       Date:  2012-11-02       Impact factor: 3.490
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