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Literature DB >> 20004768

mtDNA data mining in GenBank needs surveying.

Yong-Gang Yao, Antonio Salas, Ian Logan, Hans-Jürgen Bandelt.

Abstract

Mesh：

Substances：
DNA, Mitochondrial

Year: 2009 PMID： 20004768 PMCID： PMC2790564 DOI： 10.1016/j.ajhg.2009.10.023

Source DB: PubMed Journal: Am J Hum Genet ISSN： 0002-9297 Impact factor: 11.025

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43 in total

1. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.

Authors: R M Andrews; I Kubacka; P F Chinnery; R N Lightowlers; D M Turnbull; N Howell
Journal: Nat Genet Date: 1999-10 Impact factor: 38.330

2. Mitochondrial genome variation in eastern Asia and the peopling of Japan.

Authors: Masashi Tanaka; Vicente M Cabrera; Ana M González; José M Larruga; Takeshi Takeyasu; Noriyuki Fuku; Li-Jun Guo; Raita Hirose; Yasunori Fujita; Miyuki Kurata; Ken-ichi Shinoda; Kazuo Umetsu; Yoshiji Yamada; Yoshiharu Oshida; Yuzo Sato; Nobutaka Hattori; Yoshikuni Mizuno; Yasumichi Arai; Nobuyoshi Hirose; Shigeo Ohta; Osamu Ogawa; Yasushi Tanaka; Ryuzo Kawamori; Masayo Shamoto-Nagai; Wakako Maruyama; Hiroshi Shimokata; Ryota Suzuki; Hidetoshi Shimodaira
Journal: Genome Res Date: 2004-10 Impact factor: 9.043

3. Phantom mutation hotspots in human mitochondrial DNA.

Authors: Anita Brandstätter; Timo Sänger; Sabine Lutz-Bonengel; Walther Parson; Eliane Béraud-Colomb; Bo Wen; Qing-Peng Kong; Claudio M Bravi; Hans-Jürgen Bandelt
Journal: Electrophoresis Date: 2005-09 Impact factor: 3.535

4. Low "penetrance" of phylogenetic knowledge in mitochondrial disease studies.

Authors: Hans-Jürgen Bandelt; Alessandro Achilli; Qing-Peng Kong; Antonio Salas; Sabine Lutz-Bonengel; Chang Sun; Ya-Ping Zhang; Antonio Torroni; Yong-Gang Yao
Journal: Biochem Biophys Res Commun Date: 2005-07-22 Impact factor: 3.575

5. A practical guide to mitochondrial DNA error prevention in clinical, forensic, and population genetics.

Authors: Antonio Salas; Angel Carracedo; Vincent Macaulay; Martin Richards; Hans-Jürgen Bandelt
Journal: Biochem Biophys Res Commun Date: 2005-09-30 Impact factor: 3.575

6. More evidence for non-maternal inheritance of mitochondrial DNA?

Authors: H-J Bandelt; Q-P Kong; W Parson; A Salas
Journal: J Med Genet Date: 2005-05-27 Impact factor: 6.318

7. Sequence and organization of the human mitochondrial genome.

Authors: S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal: Nature Date: 1981-04-09 Impact factor: 49.962

8. mtDNA variation predicts population size in humans and reveals a major Southern Asian chapter in human prehistory.

Authors: Quentin D Atkinson; Russell D Gray; Alexei J Drummond
Journal: Mol Biol Evol Date: 2007-12-18 Impact factor: 16.240

9. Phylogeny and antiquity of M macrohaplogroup inferred from complete mt DNA sequence of Indian specific lineages.

Authors: Revathi Rajkumar; Jheelam Banerjee; Hima Bindu Gunturi; R Trivedi; V K Kashyap
Journal: BMC Evol Biol Date: 2005-04-02 Impact factor: 3.260

10. The role of selection in the evolution of human mitochondrial genomes.

Authors: Toomas Kivisild; Peidong Shen; Dennis P Wall; Bao Do; Raphael Sung; Karen Davis; Giuseppe Passarino; Peter A Underhill; Curt Scharfe; Antonio Torroni; Rosaria Scozzari; David Modiano; Alfredo Coppa; Peter de Knijff; Marcus Feldman; Luca L Cavalli-Sforza; Peter J Oefner
Journal: Genetics Date: 2005-09-19 Impact factor: 4.562

36 in total

1. Sephardic signature in haplogroup T mitochondrial DNA.

Authors: Felice L Bedford
Journal: Eur J Hum Genet Date: 2011-11-23 Impact factor: 4.246

Review 2. The case for the continuing use of the revised Cambridge Reference Sequence (rCRS) and the standardization of notation in human mitochondrial DNA studies.

Authors: Hans-Jürgen Bandelt; Anita Kloss-Brandstätter; Martin B Richards; Yong-Gang Yao; Ian Logan
Journal: J Hum Genet Date: 2013-12-05 Impact factor: 3.172

10. Poor Man's 1000 Genome Project: Recent Human Population Expansion Confounds the Detection of Disease Alleles in 7,098 Complete Mitochondrial Genomes.

Authors: Hie Lim Kim; Stephan C Schuster
Journal: Front Genet Date: 2013-02-28 Impact factor: 4.599

mtDNA data mining in GenBank needs surveying.

1. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.

2. Mitochondrial genome variation in eastern Asia and the peopling of Japan.

3. Phantom mutation hotspots in human mitochondrial DNA.

4. Low "penetrance" of phylogenetic knowledge in mitochondrial disease studies.

5. A practical guide to mitochondrial DNA error prevention in clinical, forensic, and population genetics.

6. More evidence for non-maternal inheritance of mitochondrial DNA?

7. Sequence and organization of the human mitochondrial genome.

8. mtDNA variation predicts population size in humans and reveals a major Southern Asian chapter in human prehistory.

9. Phylogeny and antiquity of M macrohaplogroup inferred from complete mt DNA sequence of Indian specific lineages.

10. The role of selection in the evolution of human mitochondrial genomes.

1. Sephardic signature in haplogroup T mitochondrial DNA.

Review 2. The case for the continuing use of the revised Cambridge Reference Sequence (rCRS) and the standardization of notation in human mitochondrial DNA studies.

3. Haplogrouping mitochondrial DNA sequences in Legal Medicine/Forensic Genetics.

4. mtDNA Variation and Analysis Using Mitomap and Mitomaster.

5. A reduced number of mtSNPs saturates mitochondrial DNA haplotype diversity of worldwide population groups.

6. Mitochondrial DNA sequence variation and haplogroup distribution in Chinese patients with LHON and m.14484T>C.

7. mtDNA Heteroplasmy in Monozygotic Twins Discordant for Schizophrenia.

8. Fine-Tuning Phylogenetic Alignment and Haplogrouping of mtDNA Sequences.

9. MitoLSDB: a comprehensive resource to study genotype to phenotype correlations in human mitochondrial DNA variations.

10. Poor Man's 1000 Genome Project: Recent Human Population Expansion Confounds the Detection of Disease Alleles in 7,098 Complete Mitochondrial Genomes.