| Literature DB >> 19997643 |
Anne Mette Fisker Hag1, Ulrik Sloth Kristoffersen, Sune Folke Pedersen, Henrik Gutte, Anne-Mette Lebech, Andreas Kjaer.
Abstract
BACKGROUND: Increased prevalence of atherosclerotic cardiovascular disease in HIV-infected patients has been observed. The cause of this accelerated atherosclerosis is a matter of controversy. As clinical studies are complicated by a multiplicity of risk-factors and a low incidence of hard endpoints, studies in animal models could be attractive alternatives. METHODOLOGY/PRINCIPALEntities:
Mesh:
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Year: 2009 PMID: 19997643 PMCID: PMC2780734 DOI: 10.1371/journal.pone.0008170
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Gene expression relative to the calibrator (RQC) expressed as mean ±SEM of n = 8–12.
(A) LOX-1: *p<0.05 aortic arch, HIV-1Tg vs. control rats; Δ p<0.05 control rats, aortic arch vs. abdominal aorta. (B) VCAM-1: *p<0.05 aortic arch, HIV-1Tg vs. control rats; Δ p<0.05 HIV-1Tg rats, aortic arch vs. abdominal aorta. (C) ICAM-1: ΔΔΔ p<0.001 control rats, aortic arch vs. abdominal aorta.
Figure 2The plasma level of sICAM-1 expressed as mean ±SEM of n = 8–12.
**p<0.01 HIV-1Tg vs. control rats.
Primers and probes.
| Name | Forward primer (5′–3′) | Reverse primer (5′–3′) | 5′ fluoro-phore | Probe (5′–3′) | 3′ quen-cher | Amplicon length (bp) |
| LOX-1 | ttgcatactttgtagacagtctctc | ctgagtttcatccattttggtcatg | FAM | ttgaccctgccatgccatgctatga | BHQ-1 | 88 |
| VCAM-1 | tttgcaagaaaagccaacatgaaag | tctccaacagttcagacgttagc | CY5 | ctgtgcctccaccagactgtacgat | BHQ-2 | 88 |
| ICAM-1 | agatcatacgggtttgggcttc | tatgactcgtgaaagaaatcagctc | FAM | ccacaggtcagggtgctttcctcaa | BHQ-1 | 75 |
| GAPDH | ccgtgttcctacccccaatg | cttcaccaccttcttgatgtcatc | HEX | ctccaggcggcatgtcagatccac | BHQ-1 | 91 |
Optimal filter setting, primer- and probe-concentration for the genes investigated.
| Name | Forward primer-concentration, nM | Reverse primer-concentration, nM | Probe-concentration, nM | Filter settings |
| LOX-1 | 300 | 300 | 400 | FAM ×4 |
| VCAM-1 | 600 | 300 | 250 | CY5 ×2 |
| ICAM-1 | 300 | 300 | 300 | FAM ×4 |
| GAPDH | 300 | 300 | 250 | HEX ×2 |