Literature DB >> 19995983

Target identification using drug affinity responsive target stability (DARTS).

Brett Lomenick1, Rui Hao, Nao Jonai, Randall M Chin, Mariam Aghajan, Sarah Warburton, Jianing Wang, Raymond P Wu, Fernando Gomez, Joseph A Loo, James A Wohlschlegel, Thomas M Vondriska, Jerry Pelletier, Harvey R Herschman, Jon Clardy, Catherine F Clarke, Jing Huang.   

Abstract

Identifying the molecular targets for the beneficial or detrimental effects of small-molecule drugs is an important and currently unmet challenge. We have developed a method, drug affinity responsive target stability (DARTS), which takes advantage of a reduction in the protease susceptibility of the target protein upon drug binding. DARTS is universally applicable because it requires no modification of the drug and is independent of the mechanism of drug action. We demonstrate use of DARTS to identify known small-molecule-protein interactions and to reveal the eukaryotic translation initiation machinery as a molecular target for the longevity-enhancing plant natural product resveratrol. We envisage that DARTS will also be useful in global mapping of protein-metabolite interaction networks and in label-free screening of unlimited varieties of compounds for development as molecular imaging agents.

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Year:  2009        PMID: 19995983      PMCID: PMC2789755          DOI: 10.1073/pnas.0910040106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  55 in total

1.  Functional discovery via a compendium of expression profiles.

Authors:  T R Hughes; M J Marton; A R Jones; C J Roberts; R Stoughton; C D Armour; H A Bennett; E Coffey; H Dai; Y D He; M J Kidd; A M King; M R Meyer; D Slade; P Y Lum; S B Stepaniants; D D Shoemaker; D Gachotte; K Chakraburtty; J Simon; M Bard; S H Friend
Journal:  Cell       Date:  2000-07-07       Impact factor: 41.582

2.  An automated multidimensional protein identification technology for shotgun proteomics.

Authors:  D A Wolters; M P Washburn; J R Yates
Journal:  Anal Chem       Date:  2001-12-01       Impact factor: 6.986

3.  Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways.

Authors:  Ainslie B Parsons; Renée L Brost; Huiming Ding; Zhijian Li; Chaoying Zhang; Bilal Sheikh; Grant W Brown; Patricia M Kane; Timothy R Hughes; Charles Boone
Journal:  Nat Biotechnol       Date:  2003-12-07       Impact factor: 54.908

4.  The human estrogen receptor-alpha is a ubiquitinated protein whose stability is affected differentially by agonists, antagonists, and selective estrogen receptor modulators.

Authors:  A L Wijayaratne; D P McDonnell
Journal:  J Biol Chem       Date:  2001-07-25       Impact factor: 5.157

5.  Global analysis of protein activities using proteome chips.

Authors:  H Zhu; M Bilgin; R Bangham; D Hall; A Casamayor; P Bertone; N Lan; R Jansen; S Bidlingmaier; T Houfek; T Mitchell; P Miller; R A Dean; M Gerstein; M Snyder
Journal:  Science       Date:  2001-07-26       Impact factor: 47.728

6.  A yeast sensor of ligand binding.

Authors:  C L Tucker; S Fields
Journal:  Nat Biotechnol       Date:  2001-11       Impact factor: 54.908

7.  Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan.

Authors:  Konrad T Howitz; Kevin J Bitterman; Haim Y Cohen; Dudley W Lamming; Siva Lavu; Jason G Wood; Robert E Zipkin; Phuong Chung; Anne Kisielewski; Li-Li Zhang; Brandy Scherer; David A Sinclair
Journal:  Nature       Date:  2003-08-24       Impact factor: 49.962

8.  Global analysis of protein expression in yeast.

Authors:  Sina Ghaemmaghami; Won-Ki Huh; Kiowa Bower; Russell W Howson; Archana Belle; Noah Dephoure; Erin K O'Shea; Jonathan S Weissman
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

9.  Discovering modes of action for therapeutic compounds using a genome-wide screen of yeast heterozygotes.

Authors:  Pek Yee Lum; Christopher D Armour; Sergey B Stepaniants; Guy Cavet; Maria K Wolf; J Scott Butler; Jerald C Hinshaw; Philippe Garnier; Glenn D Prestwich; Amy Leonardson; Philip Garrett-Engele; Christopher M Rush; Martin Bard; Greg Schimmack; John W Phillips; Christopher J Roberts; Daniel D Shoemaker
Journal:  Cell       Date:  2004-01-09       Impact factor: 41.582

10.  Conditional protein alleles using knockin mice and a chemical inducer of dimerization.

Authors:  Kryn Stankunas; J Henri Bayle; Jason E Gestwicki; Yun-Ming Lin; Thomas J Wandless; Gerald R Crabtree
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

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  260 in total

Review 1.  Mass spectrometry imaging for drugs and metabolites.

Authors:  Tyler Greer; Robert Sturm; Lingjun Li
Journal:  J Proteomics       Date:  2011-04-13       Impact factor: 4.044

2.  Target identification by chromatographic co-elution: monitoring of drug-protein interactions without immobilization or chemical derivatization.

Authors:  Janet N Y Chan; Dajana Vuckovic; Lekha Sleno; Jonathan B Olsen; Oxana Pogoutse; Pierre Havugimana; Johannes A Hewel; Navgeet Bajaj; Yale Wang; Marcel F Musteata; Corey Nislow; Andrew Emili
Journal:  Mol Cell Proteomics       Date:  2012-02-22       Impact factor: 5.911

3.  The protein expression landscape of the Arabidopsis root.

Authors:  Jalean J Petricka; Monica A Schauer; Molly Megraw; Natalie W Breakfield; J Will Thompson; Stoyan Georgiev; Erik J Soderblom; Uwe Ohler; Martin Arthur Moseley; Ueli Grossniklaus; Philip N Benfey
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-23       Impact factor: 11.205

4.  Simplified proteomics approach to discover protein-ligand interactions.

Authors:  Youngil Chang; Jonathan P Schlebach; Ross A VerHeul; Chiwook Park
Journal:  Protein Sci       Date:  2012-07-23       Impact factor: 6.725

5.  Proteomic profiling of a layered tissue reveals unique glycolytic specializations of photoreceptor cells.

Authors:  Boris Reidel; J Will Thompson; Sina Farsiu; M Arthur Moseley; Nikolai P Skiba; Vadim Y Arshavsky
Journal:  Mol Cell Proteomics       Date:  2010-12-20       Impact factor: 5.911

Review 6.  Discovery of novel drug targets and their functions using phenotypic screening of natural products.

Authors:  Junghwa Chang; Ho Jeong Kwon
Journal:  J Ind Microbiol Biotechnol       Date:  2015-09-12       Impact factor: 3.346

7.  Using Chemical Probes to Assess the Feasibility of Targeting SecA for Developing Antimicrobial Agents against Gram-Negative Bacteria.

Authors:  Jinshan Jin; Ying-Hsin Hsieh; Jianmei Cui; Krishna Damera; Chaofeng Dai; Arpana S Chaudhary; Hao Zhang; Hsiuchin Yang; Nannan Cao; Chun Jiang; Martti Vaara; Binghe Wang; Phang C Tai
Journal:  ChemMedChem       Date:  2016-10-18       Impact factor: 3.466

8.  Folic Acid Exerts Post-Ischemic Neuroprotection In Vitro Through HIF-1α Stabilization.

Authors:  Charles K Davis; Sreekala S Nampoothiri; G K Rajanikant
Journal:  Mol Neurobiol       Date:  2018-03-14       Impact factor: 5.590

9.  Thermodynamic analysis of protein-ligand binding interactions in complex biological mixtures using the stability of proteins from rates of oxidation.

Authors:  Erin C Strickland; M Ariel Geer; Duc T Tran; Jagat Adhikari; Graham M West; Patrick D DeArmond; Ying Xu; Michael C Fitzgerald
Journal:  Nat Protoc       Date:  2012-12-20       Impact factor: 13.491

10.  The Chemistry and Biology of Nakiterpiosin - C-nor-D-Homosteroids.

Authors:  Shuanhu Gao; Qiaoling Wang; Gelin Wang; Brett Lomenick; Jie Liu; Chih-Wei Fan; Lih-Wen Deng; Jing Huang; Lawrence Lum; Chuo Chen
Journal:  Synlett       Date:  2012-10       Impact factor: 2.454

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