Literature DB >> 19966936

Developing a multidisciplinary prospective melanoma biospecimen repository to advance translational research.

Lindsay G Wich, Heather K Hamilton, Richard L Shapiro, Anna Pavlick, Russell S Berman, David Polsky, Judith D Goldberg, Eva Hernando, Prashiela Manga, Michelle Krogsgaard, Hideko Kamino, Farbod Darvishian, Peng Lee, Seth J Orlow, Harry Ostrer, Nina Bhardwaj, Iman Osman.   

Abstract

Several challenges face the development and operation of a biospecimen bank linked to clinical information, a critical component of any effective translational research program. Melanoma adds particular complexity and difficulty to such an endeavor considering the unique characteristics of this malignancy. We describe here a review of biospecimen bank and our experience in establishing a multi-disciplinary, prospective, integrated clinicopathological-biospecimen database in melanoma. The Interdisciplinary Melanoma Cooperative Group (IMCG), a prospective clinicopathological and biospecimen database, was established at the New York University (NYU) Langone Medical Center. With patients' informed consent, biospecimens from within and outside NYU, clinicopathological data, and follow-up information are collected using developed protocols. Information pertaining to biospecimens is recorded in 35 fields, and clinicopathological information is recorded in 371 fields within 5 modules in a virtual network system. Investigators conducting research utilizing the IMCG biospecimen resource are blind to clinicopathological information, and molecular data generated using biospecimens are linked independently with clinicopathological data by biostatistics investigators. This translational research enterprise acts as a valuable resource to efficiently translate laboratory discoveries to the clinic.

Entities:  

Keywords:  Melanoma; clinical database; model; specimen bank; translational medicine

Year:  2009        PMID: 19966936      PMCID: PMC2776290     

Source DB:  PubMed          Journal:  Am J Transl Res            Impact factor:   4.060


  19 in total

1.  Early detection of thick melanomas in the United States: beware of the nodular subtype.

Authors:  Marie-France Demierre; Connie Chung; Donald R Miller; Alan C Geller
Journal:  Arch Dermatol       Date:  2005-06

2.  An estimate of the annual direct cost of treating cutaneous melanoma.

Authors:  H Tsao; G S Rogers; A J Sober
Journal:  J Am Acad Dermatol       Date:  1998-05       Impact factor: 11.527

3.  Markers and tissue resources for melanoma: meeting report.

Authors:  Dorothea Becker; Martin C Mihm; Stephen M Hewitt; Vernon K Sondak; Jane W Fountain; Magdalena Thurin
Journal:  Cancer Res       Date:  2006-11-15       Impact factor: 12.701

4.  Immunization of malignant melanoma patients with full-length NY-ESO-1 protein using TLR7 agonist imiquimod as vaccine adjuvant.

Authors:  Sylvia Adams; David W O'Neill; Daisuke Nonaka; Elizabeth Hardin; Luis Chiriboga; Kimberly Siu; Crystal M Cruz; Angelica Angiulli; Francesca Angiulli; Erika Ritter; Rose Marie Holman; Richard L Shapiro; Russell S Berman; Natalie Berner; Yongzhao Shao; Olivier Manches; Linda Pan; Ralph R Venhaus; Eric W Hoffman; Achim Jungbluth; Sacha Gnjatic; Lloyd Old; Anna C Pavlick; Nina Bhardwaj
Journal:  J Immunol       Date:  2008-07-01       Impact factor: 5.422

5.  Shedding of distinct cryptic collagen epitope (HU177) in sera of melanoma patients.

Authors:  Bruce Ng; Jan Zakrzewski; Melanie Warycha; Paul J Christos; Dean F Bajorin; Richard L Shapiro; Russell S Berman; Anna C Pavlick; David Polsky; Madhu Mazumdar; Anthony Montgomery; Leonard Liebes; Peter C Brooks; Iman Osman
Journal:  Clin Cancer Res       Date:  2008-10-01       Impact factor: 12.531

6.  Gene expression signatures for tumor progression, tumor subtype, and tumor thickness in laser-microdissected melanoma tissues.

Authors:  Jochen Jaeger; Dirk Koczan; Hans-Juergen Thiesen; Saleh M Ibrahim; Gerd Gross; Rainer Spang; Manfred Kunz
Journal:  Clin Cancer Res       Date:  2007-02-01       Impact factor: 12.531

Review 7.  Non-melanocytic lesions mimicking melanocytic lesions.

Authors:  E Calonje
Journal:  Pathology       Date:  2004-10       Impact factor: 5.306

8.  HMB-45, S-100, NK1/C3, and MART-1 in metastatic melanoma.

Authors:  Judit Zubovits; Elizabeth Buzney; Lawrence Yu; Lyn M Duncan
Journal:  Hum Pathol       Date:  2004-02       Impact factor: 3.466

9.  Meta-analysis of sentinel lymph node positivity in thin melanoma (<or=1 mm).

Authors:  Melanie A Warycha; Jan Zakrzewski; Quanhong Ni; Richard L Shapiro; Russell S Berman; Anna C Pavlick; David Polsky; Madhu Mazumdar; Iman Osman
Journal:  Cancer       Date:  2009-02-15       Impact factor: 6.860

10.  Expression of the cancer/testis antigen NY-ESO-1 in primary and metastatic malignant melanoma (MM)--correlation with prognostic factors.

Authors:  Elsa F Velazquez; Achim A Jungbluth; Molly Yancovitz; Sacha Gnjatic; Sylvia Adams; David O'Neill; Kira Zavilevich; Tatyana Albukh; Paul Christos; Madhu Mazumdar; Anna Pavlick; David Polsky; Richard Shapiro; Russell Berman; Joanna Spira; Klaus Busam; Iman Osman; Nina Bhardwaj
Journal:  Cancer Immun       Date:  2007-07-12
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  29 in total

1.  Development of five new melanoma low passage cell lines representing the clinical and genetic profile of their tumors of origin.

Authors:  Eleazar Vega-Saenz de Miera; Erica B Friedman; Holly S Greenwald; Mary A Perle; Iman Osman
Journal:  Pigment Cell Melanoma Res       Date:  2012-05       Impact factor: 4.693

Review 2.  Designing and managing a flexible and dynamic biorepository system: a 15-year perspective from the CPCRA, ESPRIT, and INSIGHT clinical trial networks.

Authors:  Katherine H Hullsiek; Michelle George; Shawn K Brown
Journal:  Curr Opin HIV AIDS       Date:  2010-11       Impact factor: 4.283

3.  Clinical relevance of detection of lymphovascular invasion in primary melanoma using endothelial markers D2-40 and CD34.

Authors:  Amy E Rose; Paul J Christos; Dan Lackaye; Richard L Shapiro; Russell Berman; Madhu Mazumdar; Hideko Kamino; Iman Osman; Farbod Darvishian
Journal:  Am J Surg Pathol       Date:  2011-10       Impact factor: 6.394

4.  Revisiting the Clinical and Biologic Relevance of Partial PTEN Loss in Melanoma.

Authors:  Keith M Giles; Brooke E Rosenbaum; Marlies Berger; Allison Izsak; Yang Li; Irineu Illa Bochaca; Eleazar Vega-Saenz de Miera; Jinhua Wang; Farbod Darvishian; Hua Zhong; Iman Osman
Journal:  J Invest Dermatol       Date:  2018-08-24       Impact factor: 8.551

5.  Immune response in melanoma: an in-depth analysis of the primary tumor and corresponding sentinel lymph node.

Authors:  Michelle W Ma; Ratna C Medicherla; Meng Qian; Eleazar Vega-Saenz de Miera; Erica B Friedman; Russell S Berman; Richard L Shapiro; Anna C Pavlick; Patrick A Ott; Nina Bhardwaj; Yongzhao Shao; Iman Osman; Farbod Darvishian
Journal:  Mod Pathol       Date:  2012-03-16       Impact factor: 7.842

6.  Development of the necrotizing enterocolitis society registry and biorepository.

Authors:  Matthew W Ralls; Samir K Gadepalli; Karl G Sylvester; Misty Good
Journal:  Semin Pediatr Surg       Date:  2017-11-06       Impact factor: 2.754

7.  PP6C hotspot mutations in melanoma display sensitivity to Aurora kinase inhibition.

Authors:  Heidi L Gold; Jordan Wengrod; Eleazar Vega-Saenz de Miera; Ding Wang; Nathaniel Fleming; Lisa Sikkema; Tomas Kirchhoff; Tsivia Hochman; Judith D Goldberg; Iman Osman; Lawrence B Gardner
Journal:  Mol Cancer Res       Date:  2013-12-12       Impact factor: 5.852

8.  A high proliferative index of recurrent melanoma is associated with worse survival.

Authors:  Ting J Tu; Michelle W Ma; Stefano Monni; Amy E Rose; Herman Yee; Farbod Darvishian; David Polsky; Russell S Berman; Richard L Shapiro; Anna C Pavlick; Madhu Mazumdar; Iman Osman
Journal:  Oncology       Date:  2011-06-24       Impact factor: 2.935

9.  De Novo vs Nevus-Associated Melanomas: Differences in Associations With Prognostic Indicators and Survival.

Authors:  Rachel M Cymerman; Yongzhao Shao; Kun Wang; Yilong Zhang; Era C Murzaku; Lauren A Penn; Iman Osman; David Polsky
Journal:  J Natl Cancer Inst       Date:  2016-05-27       Impact factor: 13.506

10.  Mitotic rate in melanoma: prognostic value of immunostaining and computer-assisted image analysis.

Authors:  Christopher S Hale; Meng Qian; Michelle W Ma; Patrick Scanlon; Russell S Berman; Richard L Shapiro; Anna C Pavlick; Yongzhao Shao; David Polsky; Iman Osman; Farbod Darvishian
Journal:  Am J Surg Pathol       Date:  2013-06       Impact factor: 6.394

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