Literature DB >> 19965032

A regularized point process generalized linear model for assessing the functional connectivity in the cat motor cortex.

Zhe Chen1, David F Putrino, Demba E Ba, Soumya Ghosh, Riccardo Barbieri, Emery N Brown.   

Abstract

Identification of multiple simultaneously recorded neural spike train recordings is an important task in understanding neuronal dependency, functional connectivity, and temporal causality in neural systems. An assessment of the functional connectivity in a group of ensemble cells was performed using a regularized point process generalized linear model (GLM) that incorporates temporal smoothness or contiguity of the solution. An efficient convex optimization algorithm was then developed for the regularized solution. The point process model was applied to an ensemble of neurons recorded from the cat motor cortex during a skilled reaching task. The implications of this analysis to the coding of skilled movement in primary motor cortex is discussed.

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Year:  2009        PMID: 19965032      PMCID: PMC2822661          DOI: 10.1109/IEMBS.2009.5334610

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  10 in total

1.  Correlated discharges among putative pyramidal neurons and interneurons in the primate prefrontal cortex.

Authors:  Christos Constantinidis; Patricia S Goldman-Rakic
Journal:  J Neurophysiol       Date:  2002-12       Impact factor: 2.714

Review 2.  Multiple neural spike train data analysis: state-of-the-art and future challenges.

Authors:  Emery N Brown; Robert E Kass; Partha P Mitra
Journal:  Nat Neurosci       Date:  2004-05       Impact factor: 24.884

3.  A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects.

Authors:  Wilson Truccolo; Uri T Eden; Matthew R Fellows; John P Donoghue; Emery N Brown
Journal:  J Neurophysiol       Date:  2004-09-08       Impact factor: 2.714

4.  Analyzing functional connectivity using a network likelihood model of ensemble neural spiking activity.

Authors:  Murat Okatan; Matthew A Wilson; Emery N Brown
Journal:  Neural Comput       Date:  2005-09       Impact factor: 2.026

5.  A mathematical framework for inferring connectivity in probabilistic neuronal networks.

Authors:  Duane Q Nykamp
Journal:  Math Biosci       Date:  2006-09-05       Impact factor: 2.144

6.  Common-input models for multiple neural spike-train data.

Authors:  Jayant E Kulkarni; Liam Paninski
Journal:  Network       Date:  2007-12       Impact factor: 1.273

7.  Analysis of between-trial and within-trial neural spiking dynamics.

Authors:  Gabriela Czanner; Uri T Eden; Sylvia Wirth; Marianna Yanike; Wendy A Suzuki; Emery N Brown
Journal:  J Neurophysiol       Date:  2008-01-23       Impact factor: 2.714

8.  Bayesian inference of functional connectivity and network structure from spikes.

Authors:  Ian H Stevenson; James M Rebesco; Nicholas G Hatsopoulos; Zach Haga; Lee E Miller; Konrad P Körding
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2008-12-09       Impact factor: 3.802

9.  Maximum likelihood identification of neural point process systems.

Authors:  E S Chornoboy; L P Schramm; A F Karr
Journal:  Biol Cybern       Date:  1988       Impact factor: 2.086

10.  Spatio-temporal correlations and visual signalling in a complete neuronal population.

Authors:  Jonathan W Pillow; Jonathon Shlens; Liam Paninski; Alexander Sher; Alan M Litke; E J Chichilnisky; Eero P Simoncelli
Journal:  Nature       Date:  2008-07-23       Impact factor: 49.962

  10 in total
  4 in total

Review 1.  Analysis of Neuronal Spike Trains, Deconstructed.

Authors:  Johnatan Aljadeff; Benjamin J Lansdell; Adrienne L Fairhall; David Kleinfeld
Journal:  Neuron       Date:  2016-07-20       Impact factor: 17.173

2.  Statistical inference for assessing functional connectivity of neuronal ensembles with sparse spiking data.

Authors:  Zhe Chen; David F Putrino; Soumya Ghosh; Riccardo Barbieri; Emery N Brown
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2010-10-11       Impact factor: 3.802

3.  nSTAT: open-source neural spike train analysis toolbox for Matlab.

Authors:  I Cajigas; W Q Malik; E N Brown
Journal:  J Neurosci Methods       Date:  2012-09-05       Impact factor: 2.390

4.  Motor cortical networks for skilled movements have dynamic properties that are related to accurate reaching.

Authors:  David F Putrino; Zhe Chen; Soumya Ghosh; Emery N Brown
Journal:  Neural Plast       Date:  2011-10-09       Impact factor: 3.599

  4 in total

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