Literature DB >> 19953080

From evolutionary genetics to human immunology: how selection shapes host defence genes.

Luis B Barreiro1, Lluís Quintana-Murci.   

Abstract

Pathogens have always been a major cause of human mortality, so they impose strong selective pressure on the human genome. Data from population genetic studies, including genome-wide scans for selection, are providing important insights into how natural selection has shaped immunity and host defence genes in specific human populations and in the human species as a whole. These findings are helping to delineate genes that are important for host defence and to increase our understanding of how past selection has had an impact on disease susceptibility in modern populations. A tighter integration between population genetic studies and immunological phenotype studies is now necessary to reveal the mechanisms that have been crucial for our past and present survival against infection.

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Year:  2009        PMID: 19953080     DOI: 10.1038/nrg2698

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  162 in total

Review 1.  Autoreactivity by design: innate B and T lymphocytes.

Authors:  A Bendelac; M Bonneville; J F Kearney
Journal:  Nat Rev Immunol       Date:  2001-12       Impact factor: 53.106

2.  Widespread balancing selection and pathogen-driven selection at blood group antigen genes.

Authors:  Matteo Fumagalli; Rachele Cagliani; Uberto Pozzoli; Stefania Riva; Giacomo P Comi; Giorgia Menozzi; Nereo Bresolin; Manuela Sironi
Journal:  Genome Res       Date:  2008-11-07       Impact factor: 9.043

3.  Haemoglobin C protects against clinical Plasmodium falciparum malaria.

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Journal:  Nature       Date:  2001-11-15       Impact factor: 49.962

4.  Cytosolic flagellin requires Ipaf for activation of caspase-1 and interleukin 1beta in salmonella-infected macrophages.

Authors:  Luigi Franchi; Amal Amer; Mathilde Body-Malapel; Thirumala-Devi Kanneganti; Nesrin Ozören; Rajesh Jagirdar; Naohiro Inohara; Peter Vandenabeele; John Bertin; Anthony Coyle; Ethan P Grant; Gabriel Núñez
Journal:  Nat Immunol       Date:  2006-04-30       Impact factor: 25.606

5.  Polymorphism and balancing selection at major histocompatibility complex loci.

Authors:  N Takahata; Y Satta; J Klein
Journal:  Genetics       Date:  1992-04       Impact factor: 4.562

Review 6.  Positive natural selection in the human lineage.

Authors:  P C Sabeti; S F Schaffner; B Fry; J Lohmueller; P Varilly; O Shamovsky; A Palma; T S Mikkelsen; D Altshuler; E S Lander
Journal:  Science       Date:  2006-06-16       Impact factor: 47.728

7.  Hemoglobin E: a balanced polymorphism protective against high parasitemias and thus severe P falciparum malaria.

Authors:  Kesinee Chotivanich; Rachanee Udomsangpetch; Kovit Pattanapanyasat; Wirongrong Chierakul; Julie Simpson; Sornchai Looareesuwan; Nicholas White
Journal:  Blood       Date:  2002-08-15       Impact factor: 22.113

Review 8.  Glucose-6-phosphate dehydrogenase deficiency and malaria.

Authors:  C Ruwende; A Hill
Journal:  J Mol Med (Berl)       Date:  1998-07       Impact factor: 4.599

9.  Differential modulation of endotoxin responsiveness by human caspase-12 polymorphisms.

Authors:  Maya Saleh; John P Vaillancourt; Rona K Graham; Matthew Huyck; Srinivasa M Srinivasula; Emad S Alnemri; Martin H Steinberg; Vikki Nolan; Clinton T Baldwin; Richard S Hotchkiss; Timothy G Buchman; Barbara A Zehnbauer; Michael R Hayden; Lindsay A Farrer; Sophie Roy; Donald W Nicholson
Journal:  Nature       Date:  2004-05-06       Impact factor: 49.962

10.  Copy number variation and evolution in humans and chimpanzees.

Authors:  George H Perry; Fengtang Yang; Tomas Marques-Bonet; Carly Murphy; Tomas Fitzgerald; Arthur S Lee; Courtney Hyland; Anne C Stone; Matthew E Hurles; Chris Tyler-Smith; Evan E Eichler; Nigel P Carter; Charles Lee; Richard Redon
Journal:  Genome Res       Date:  2008-09-04       Impact factor: 9.043

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  219 in total

1.  Don't move: LRRK2 arrests NFAT in the cytoplasm.

Authors:  Bana Jabri; Luis B Barreiro
Journal:  Nat Immunol       Date:  2011-10-19       Impact factor: 25.606

2.  The evolution of evolutionary molecular medicine: genomics are transforming evolutionary biology into a science with new importance for modern medicine.

Authors:  Detlev Ganten; Randolph Nesse
Journal:  J Mol Med (Berl)       Date:  2012-05       Impact factor: 4.599

3.  Lineage-specific evolution of T-cell immunoglobulin and mucin domain 1 gene in the primates.

Authors:  Hitoshi Ohtani; Taeko K Naruse; Yuki Iwasaki; Hirofumi Akari; Takafumi Ishida; Tetsuro Matano; Akinori Kimura
Journal:  Immunogenetics       Date:  2012-06-19       Impact factor: 2.846

4.  Adaptive selection of an incretin gene in Eurasian populations.

Authors:  Chia Lin Chang; James J Cai; Chiening Lo; Jorge Amigo; Jae-Il Park; Sheau Yu Teddy Hsu
Journal:  Genome Res       Date:  2010-10-26       Impact factor: 9.043

5.  Extensive X-linked adaptive evolution in central chimpanzees.

Authors:  Christina Hvilsom; Yu Qian; Thomas Bataillon; Yingrui Li; Thomas Mailund; Bettina Sallé; Frands Carlsen; Ruiqiang Li; Hancheng Zheng; Tao Jiang; Hui Jiang; Xin Jin; Kasper Munch; Asger Hobolth; Hans R Siegismund; Jun Wang; Mikkel Heide Schierup
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

6.  Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes.

Authors:  Matthieu Deschamps; Guillaume Laval; Maud Fagny; Yuval Itan; Laurent Abel; Jean-Laurent Casanova; Etienne Patin; Lluis Quintana-Murci
Journal:  Am J Hum Genet       Date:  2016-01-07       Impact factor: 11.025

7.  Cytokine and cytokine receptor genes of the adaptive immune response are differentially associated with breast cancer risk in American women of African and European ancestry.

Authors:  Lei Quan; Zhihong Gong; Song Yao; Elisa V Bandera; Gary Zirpoli; Helena Hwang; Michelle Roberts; Gregory Ciupak; Warren Davis; Lara Sucheston; Karen Pawlish; Dana H Bovbjerg; Lina Jandorf; Citadel Cabasag; Jean-Gabriel Coignet; Christine B Ambrosone; Chi-Chen Hong
Journal:  Int J Cancer       Date:  2013-10-08       Impact factor: 7.396

Review 8.  Genetics of rheumatoid arthritis in Asia--present and future.

Authors:  Kazuhiko Yamamoto; Yukinori Okada; Akari Suzuki; Yuta Kochi
Journal:  Nat Rev Rheumatol       Date:  2015-02-10       Impact factor: 20.543

Review 9.  Evolutionary and population (epi)genetics of immunity to infection.

Authors:  Luis B Barreiro; Lluis Quintana-Murci
Journal:  Hum Genet       Date:  2020-04-13       Impact factor: 4.132

10.  Convergent evolution in European and Rroma populations reveals pressure exerted by plague on Toll-like receptors.

Authors:  Hafid Laayouni; Marije Oosting; Pierre Luisi; Mihai Ioana; Santos Alonso; Isis Ricaño-Ponce; Gosia Trynka; Alexandra Zhernakova; Theo S Plantinga; Shih-Chin Cheng; Jos W M van der Meer; Radu Popp; Ajit Sood; B K Thelma; Cisca Wijmenga; Leo A B Joosten; Jaume Bertranpetit; Mihai G Netea
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-03       Impact factor: 11.205

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