| Literature DB >> 19951893 |
Chad N Brocker1, Vasilis Vasiliou, Daniel W Nebert.
Abstract
The 'A-disintegrin and metalloproteinase' ( ADAM ) and 'A-disintegrin and metalloproteinase with thrombospondin motifs' ( ADAMTS ) genes make up two similar, yet distinct, gene families. The human and mouse genomes contain 21 and 24 putatively functional protein-coding ADAM genes, respectively, and 24 versus 32 putatively functional protein-coding ADAMTS genes, respectively. Analysis of evolutionary divergence shows that both families are unique. Each of the two families can be separated, if need be, into groups of more closely related members: six subfamilies for ADAM , four subfamilies for ADAMTS. The presence of both disintegrin and peptidase domains within the ADAM and ADAMTS proteins implies multiple biological roles within the cell. Membrane-anchored ADAM proteins are best known for their role in activating zymogens--including tumour necrosis factor-alpha, epidermal growth factor (EGF) and amyloid precursor protein (APP). ADAM proteins can also participate in cell adhesion via their interaction with integrins in neighbouring cells. ADAMTS are secreted proteins that participate in extracellular matrix maintenance by way of their cleavage of procollagen and proteoglycans. ADAMTS proteins also are involved in coagulation by cleaving von Willibrand factor precursor protein. ADAM and ADAMTS proteins participate in a wide range of cellular processes, including cell adhesion and migration, ectodomain shedding, proteolysis, development, ovulation and angiogenesis. Because these enzymes are believed to play an important role in a number of pathologies, including Alzheimer's disease, rheumatoid arthritis, atherosclerosis, asthma and cancer progression, the products of the ADAM and ADAMTS genes represent promising drug targets for the prevention and management of a number of human diseases.Entities:
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Year: 2009 PMID: 19951893 PMCID: PMC3500187 DOI: 10.1186/1479-7364-4-1-43
Source DB: PubMed Journal: Hum Genomics ISSN: 1473-9542 Impact factor: 4.639
Human ADAM genes, as listed in the Human Gene Nomenclature Committee (HGNC) database
| Gene name | Other aliases | Chromosomal location | RefSeq RNA | RefSeq protein | Amino acid number |
|---|---|---|---|---|---|
| 8p11.2 | NM001464.3 | NP001455.3 | 735 | ||
| 8p21.2 | NM003817.2 | NP003808.2 | 754 | ||
| 10q26.3 | NM001109.3 | NP001100.2 | 856 | ||
| 8p11.23 | NM003816.2 | NP003807.1 | 819 | ||
| 15q2; 15q22 | NM001110.2 | NP001101.1 | 748 | ||
| 17q21.3 | NM002390.4 | NP002381.2 | 769 | ||
| 10q26.3 | NM003474.4 | NP003465.3 | 909 | ||
| 1q21.3 | NM003815.3 | NP003806.3 | 814 | ||
| 2p25 | NM003183.4 | NP003174.3 | 824 | ||
| 8p11.22 | NM014237.1 | NP055052.1 | 739 | ||
| 5q32-q33 | NM023038.3 | NP075525.2 | 956 | ||
| 14q24.1 | NM003814.4 | NP003805.3 | 776 | ||
| 14q24.1 | NM003813.2 | NP003804.1 | 722 | ||
| 7q21 | NM004194.2 | NP004185.1 | 859 | ||
| 2q33 | NM003812.2 | NP003803.1 | 832 | ||
| 8p21.2 | NM014265.4 | NP055080.2 | 775 | ||
| 4q34 | NM014269.4 | NP055084.3 | 820 | ||
| 1p13-p11 | NM021794.2 | NP068566.2 | 790 | ||
| 8p11.23 | NM145004.5 | NP659441.3 | 787 | ||
| 20p13 | NM025220.2 | NP079496.1 | 813 | ||
| 8p21.2 | NM014479.3 | NP055294.1 | 470 |
ADAM pseudogenes include ADAM1, ADAM3A, ADAM3B, ADAM5P, ADAM6 and ADAM21P; therefore, these are not included in the 'active' gene list, nor are they included in the dendogram in Figure 2.
Human ADAMTS genes, as listed in the HGNC database
| Gene name | Other aliases | Chromosomal location | RefSeq RNA | RefSeq protein | Amino acid number |
|---|---|---|---|---|---|
| 21q21.2 | NM006988.3 | NP008919.3 | 967 | ||
| 5 qter | NM014244.2 | NP055059.2 | 1211 | ||
| 4q13.3 | NM014243.1 | NP055058.1 | 1205 | ||
| 1q21-q23 | NM005099.4 | NP005090.3 | 837 | ||
| 21q21.3 | NM007038.3 | NP008969.2 | 930 | ||
| 5q12 | NM197941.2 | NP922932.2 | 1117 | ||
| 15q24.2 | NM014272.3 | NP055087.2 | 1686 | ||
| 11q25 | NM007037.4 | NP008968.4 | 889 | ||
| 3p14.3-p14.2 | NM182920.1 | NP891550.1 | 1935 | ||
| 19p13.3 | NM030957.2 | NP112219.2 | 1103 | ||
| 5q35 | NM030955.2 | NP112217.2 | 1594 | ||
| 9q34 | NM139025.3 | NP620594.1 | 1427 | ||
| 10q21 | NM139155.2 | NP631894.2 | 1226 | ||
| 11q25 | NM139055.1 | NP620686.1 | 950 | ||
| 5p15 | NM139056.2 | NP620687.2 | 1224 | ||
| 15q24 | NM139057.2 | NP620688.2 | 1095 | ||
| 16q23 | NM199355.2 | NP955387.1 | 1221 | ||
| 5q31 | NM133638.3 | NP598377.3 | 1207 | ||
| 12q12 | NM025003.3 | NP079279.3 | 1910 | ||
| 9p22.2-p22.1 | NM001040272.4 | NP001035362.3 | 1762 | ||
| 9q34.2 | NM001145320.1 | NP001138792.1 | 951 | ||
| 15q25.2 | NM207517.2 | NP997400.2 | 1691 | ||
| 1q21.2 | NM019032.4 | NP061905.2 | 1074 | ||
| 19p13.3 | NM213604.2 | NP998769.2 | 471 |
Figure 1The individual modular structures of the ADAM and ADAMTS proteins. CR, cysteine-rich domain; CT, cytoplasmic tail; DIS, disintegrin domain; EGF, epidermal growth factor-like domain; MP, metallopeptidase domain; PD, prodomain; SD, spacer domain; TM, transmembrane domain; TS, thrombospondin-like domain.
Figure 2Clustering dendrogram of the human putatively functional . The dendrogram was constructed using ClustalW and known peptide sequences. Several human 'outlier' gene products, including CYP1A1, ALDH3A1 and a metalloprotease subfamily, were added to the original ClustalW and found to lie outside the ADAM and ADAMTS families (data not illustrated).