Literature DB >> 19948253

13C isotope effect on the reaction catalyzed by prephenate dehydratase.

Jeremy Van Vleet1, Andreas Kleeb, Peter Kast, Donald Hilvert, W W Cleland.   

Abstract

The (13)C isotope effect for the conversion of prephenate to phenylpyruvate by the enzyme prephenate dehydratase from Methanocaldococcus jannaschii is 1.0334+/-0.0006. The size of this isotope effect suggests that the reaction is concerted. From the X-ray structure of a related enzyme, it appears that the only residue capable of acting as the general acid needed for removal of the hydroxyl group is threonine-172, which is contained in a conserved TRF motif. The more favorable entropy of activation for the enzyme-catalyzed process (25 eu larger than for the acid-catalyzed reaction) has been explained by a preorganized microenvironment that obviates the need for extensive solvent reorganization. This is consistent with forced planarity of the ring and side chain, which would place the leaving carboxyl and hydroxyl out of plane. Such distortion of the substrate may be a major contributor to catalysis. Copyright 2009 Elsevier B.V. All rights reserved.

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Year:  2009        PMID: 19948253      PMCID: PMC2829336          DOI: 10.1016/j.bbapap.2009.11.018

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  9 in total

1.  Accumulation of phenylalanine by a phenylalanineless mutant of Escherichia coli.

Authors:  M KATAGIRI; R SATO
Journal:  Science       Date:  1953-08-28       Impact factor: 47.728

2.  A monofunctional and thermostable prephenate dehydratase from the archaeon Methanocaldococcus jannaschii.

Authors:  Andreas C Kleeb; Peter Kast; Donald Hilvert
Journal:  Biochemistry       Date:  2006-11-28       Impact factor: 3.162

3.  Metabolic engineering of a genetic selection system with tunable stringency.

Authors:  Andreas C Kleeb; Maryam Hansson Edalat; Marianne Gamper; Johannes Haugstetter; Lars Giger; Martin Neuenschwander; Peter Kast; Donald Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-22       Impact factor: 11.205

4.  Chorismate mutase-prephenate dehydratase from Escherichia coli. Study of catalytic and regulatory domains using genetically engineered proteins.

Authors:  S Zhang; G Pohnert; P Kongsaeree; D B Wilson; J Clardy; B Ganem
Journal:  J Biol Chem       Date:  1998-03-13       Impact factor: 5.157

5.  Probing the catalytic mechanism of prephenate dehydratase by site-directed mutagenesis of the Escherichia coli P-protein dehydratase domain.

Authors:  S Zhang; D B Wilson; B Ganem
Journal:  Biochemistry       Date:  2000-04-25       Impact factor: 3.162

6.  Prephenate dehydratase of the actinomycete Amycolatopsis methanolica: purification and characterization of wild-type and deregulated mutant proteins.

Authors:  G J Euverink; D J Wolters; L Dijkhuizen
Journal:  Biochem J       Date:  1995-05-15       Impact factor: 3.857

7.  Structures of open (R) and close (T) states of prephenate dehydratase (PDT)--implication of allosteric regulation by L-phenylalanine.

Authors:  Kemin Tan; Hui Li; Rongguang Zhang; Minyi Gu; Shonda T Clancy; Andrzej Joachimiak
Journal:  J Struct Biol       Date:  2007-11-29       Impact factor: 2.867

8.  Mutational analysis of feedback inhibition and catalytic sites of prephenate dehydratase from Corynebacterium glutamicum.

Authors:  Shih-Kuang Hsu; Long-Liu Lin; Hsueh-Hsia Lo; Wen-Hwei Hsu
Journal:  Arch Microbiol       Date:  2004-01-21       Impact factor: 2.552

9.  Mechanisms of enzymatic and acid-catalyzed decarboxylations of prephenate.

Authors:  J D Hermes; P A Tipton; M A Fisher; M H O'Leary; J F Morrison; W W Cleland
Journal:  Biochemistry       Date:  1984-12-04       Impact factor: 3.162

  9 in total
  4 in total

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Authors:  Kathleen M Meneely; Qianyi Luo; Audrey L Lamb
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2.  Stereochemical outcome at four stereogenic centers during conversion of prephenate to tetrahydrotyrosine by BacABGF in the bacilysin pathway.

Authors:  Jared B Parker; Christopher T Walsh
Journal:  Biochemistry       Date:  2012-07-05       Impact factor: 3.162

3.  Olefin isomerization regiochemistries during tandem action of BacA and BacB on prephenate in bacilysin biosynthesis.

Authors:  Jared B Parker; Christopher T Walsh
Journal:  Biochemistry       Date:  2012-04-06       Impact factor: 3.162

4.  Structure-guided discovery of the metabolite carboxy-SAM that modulates tRNA function.

Authors:  Jungwook Kim; Hui Xiao; Jeffrey B Bonanno; Chakrapani Kalyanaraman; Shoshana Brown; Xiangying Tang; Nawar F Al-Obaidi; Yury Patskovsky; Patricia C Babbitt; Matthew P Jacobson; Young-Sam Lee; Steven C Almo
Journal:  Nature       Date:  2013-05-15       Impact factor: 49.962

  4 in total

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