Literature DB >> 19947575

Homochiral stereochemistry: the missing link of structure to energetics in protein folding.

Anil Kumar1, Vibin Ramakrishnan, Ranjit Ranbhor, Kirti Patel, Susheel Durani.   

Abstract

The notion is tested that homochiral stereochemistry being ubiquitous to protein structure could be critical to protein folding as well, causing it to become frustrated energetically providing the basis for its solvent- and sequence-mediated control. The proof in support of the notion is found in a consensus of experiment and computation according to which suitable oligopeptides are in their folding-unfolding equilibria, at both macrostate and microstate levels, susceptible to dielectric because of the conflict of peptide-chain electrostatics with interpeptide hydrogen bonds when the structure is poly-L but not when it is alternating-L,D. The argument is thus made that homochiral stereochemistry may in protein folding provide the unifying basis for its solvent- and sequence-mediated control based on screening of peptide-chain electrostatics under conflict with folding of the chain due to homochiral stereochemistry. Dielectric is brought into spotlight as the effect comparatively obscure but presumably critical to the folding in protein structure for its control.

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Year:  2009        PMID: 19947575     DOI: 10.1021/jp906811k

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Creating novel protein scripts beyond natural alphabets.

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2.  Syndiotactic hexamer peptide nanodots.

Authors:  Vivek Prakash; B Mukesh; Sajitha Sasidharan; Amay Sanjay Redkar; Abhishek Roy; R Anandalakshmi; Vibin Ramakrishnan
Journal:  Eur Biophys J       Date:  2022-07-22       Impact factor: 2.095

3.  Enhancing biocompatibility of D-oligopeptide hydrogels by negative charges.

Authors:  Laura L Hyland; Julianne D Twomey; Savannah Vogel; Adam H Hsieh; Y Bruce Yu
Journal:  Biomacromolecules       Date:  2013-01-07       Impact factor: 6.988

4.  Chirality-Mediated Mechanical and Structural Properties of Oligopeptide Hydrogels.

Authors:  Marc B Taraban; Yue Feng; Boualem Hammouda; Laura L Hyland; Y Bruce Yu
Journal:  Chem Mater       Date:  2012-06-26       Impact factor: 9.811

Review 5.  Fundamental Clock of Biological Aging: Convergence of Molecular, Neurodegenerative, Cognitive and Psychiatric Pathways: Non-Equilibrium Thermodynamics Meet Psychology.

Authors:  Victor V Dyakin; Nuka V Dyakina-Fagnano; Laura B Mcintire; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2021-12-28       Impact factor: 5.923

Review 6.  Arrow of Time, Entropy, and Protein Folding: Holistic View on Biochirality.

Authors:  Victor V Dyakin; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2022-03-28       Impact factor: 5.923

  6 in total

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