Literature DB >> 19944637

Domestication and plant genomes.

Haibao Tang1, Uzay Sezen, Andrew H Paterson.   

Abstract

The techniques of plant improvement have been evolving with the advancement of technology, progressing from crop domestication by Neolithic humans to scientific plant breeding, and now including DNA-based genotyping and genetic engineering. Archeological findings have shown that early human ancestors often unintentionally selected for and finally fixed a few major domestication traits over time. Recent advancement of molecular and genomic tools has enabled scientists to pinpoint changes to specific chromosomal regions and genetic loci that are responsible for dramatic morphological and other transitions that distinguish crops from their wild progenitors. Extensive studies in a multitude of additional crop species, facilitated by rapid progress in sequencing and resequencing(s) of crop genomes, will further our understanding of the genomic impact from both the unusual population history of cultivated plants and millennia of human selection.

Entities:  

Mesh:

Year:  2009        PMID: 19944637     DOI: 10.1016/j.pbi.2009.10.008

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  33 in total

1.  Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium).

Authors:  Steve Larson; Lee DeHaan; Jesse Poland; Xiaofei Zhang; Kevin Dorn; Traci Kantarski; James Anderson; Jeremy Schmutz; Jane Grimwood; Jerry Jenkins; Shengqiang Shu; Jared Crain; Matthew Robbins; Kevin Jensen
Journal:  Theor Appl Genet       Date:  2019-06-06       Impact factor: 5.699

Review 2.  Factors influencing the effect size distribution of adaptive substitutions.

Authors:  Emily L Dittmar; Christopher G Oakley; Jeffrey K Conner; Billie A Gould; Douglas W Schemske
Journal:  Proc Biol Sci       Date:  2016-04-13       Impact factor: 5.349

Review 3.  Crop genomics: advances and applications.

Authors:  Peter L Morrell; Edward S Buckler; Jeffrey Ross-Ibarra
Journal:  Nat Rev Genet       Date:  2011-12-29       Impact factor: 53.242

4.  The Temporal Dynamics of Background Selection in Nonequilibrium Populations.

Authors:  Raul Torres; Markus G Stetter; Ryan D Hernandez; Jeffrey Ross-Ibarra
Journal:  Genetics       Date:  2020-02-18       Impact factor: 4.562

5.  A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity.

Authors:  Jianjian Qi; Xin Liu; Di Shen; Han Miao; Bingyan Xie; Xixiang Li; Peng Zeng; Shenhao Wang; Yi Shang; Xingfang Gu; Yongchen Du; Ying Li; Tao Lin; Jinhong Yuan; Xueyong Yang; Jinfeng Chen; Huiming Chen; Xingyao Xiong; Ke Huang; Zhangjun Fei; Linyong Mao; Li Tian; Thomas Städler; Susanne S Renner; Sophien Kamoun; William J Lucas; Zhonghua Zhang; Sanwen Huang
Journal:  Nat Genet       Date:  2013-10-20       Impact factor: 38.330

Review 6.  Influence of domestication on specialized metabolic pathways in fruit crops.

Authors:  M Saleem Dar; Bhushan B Dholakia; Abhijeet P Kulkarni; Pranjali S Oak; Dhanasekaran Shanmugam; Vidya S Gupta; Ashok P Giri
Journal:  Planta       Date:  2021-02-04       Impact factor: 4.116

7.  Population Genomics of the Maize Pathogen Ustilago maydis: Demographic History and Role of Virulence Clusters in Adaptation.

Authors:  Gabriel Schweizer; Muhammad Bilal Haider; Gustavo V Barroso; Nicole Rössel; Karin Münch; Regine Kahmann; Julien Y Dutheil
Journal:  Genome Biol Evol       Date:  2021-05-07       Impact factor: 3.416

8.  Lack of low frequency variants masks patterns of non-neutral evolution following domestication.

Authors:  Céline H Frère; Peter J Prentis; Edward K Gilding; Agnieszka M Mudge; Alan Cruickshank; Ian D Godwin
Journal:  PLoS One       Date:  2011-08-10       Impact factor: 3.240

9.  Tracing soybean domestication history: From nucleotide to genome.

Authors:  Moon Young Kim; Kyujung Van; Yang Jae Kang; Kil Hyun Kim; Suk-Ha Lee
Journal:  Breed Sci       Date:  2012-02-04       Impact factor: 2.086

10.  Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil.

Authors:  Andrew G Sharpe; Larissa Ramsay; Lacey-Anne Sanderson; Michael J Fedoruk; Wayne E Clarke; Rong Li; Sateesh Kagale; Perumal Vijayan; Albert Vandenberg; Kirstin E Bett
Journal:  BMC Genomics       Date:  2013-03-18       Impact factor: 3.969

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