Literature DB >> 19944009

Bioinformatic approaches for the structure and function of membrane proteins.

Hyun-Jun Nam1, Jouhyun Jeon, Sanguk Kim.   

Abstract

Membrane proteins play important roles in the biology of the cell, including intercellular communication and molecular transport. Their well-established importance notwithstanding, the high-resolution structures of membrane proteins remain elusive due to difficulties in protein expression, purification and crystallization. Thus, accurate prediction of membrane protein topology can increase the understanding of membrane protein function. Here, we provide a brief review of the diverse computational methods for predicting membrane protein structure and function, including recent progress and essential bioinformatics tools. Our hope is that this review will be instructive to users studying membrane protein biology in their choice of appropriate bioinformatics methods.

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Year:  2009        PMID: 19944009     DOI: 10.5483/bmbrep.2009.42.11.697

Source DB:  PubMed          Journal:  BMB Rep        ISSN: 1976-6696            Impact factor:   4.778


  12 in total

1.  Treatment news bulletin.

Authors: 
Journal:  Curr Treat Options Neurol       Date:  2000-01       Impact factor: 3.598

Review 2.  Single-spanning transmembrane domains in cell growth and cell-cell interactions: More than meets the eye?

Authors:  Pierre Hubert; Paul Sawma; Jean-Pierre Duneau; Jonathan Khao; Jérôme Hénin; Dominique Bagnard; James Sturgis
Journal:  Cell Adh Migr       Date:  2010-04-20       Impact factor: 3.405

3.  Conformationally Preorganized Diastereomeric Norbornane-Based Maltosides for Membrane Protein Study: Implications of Detergent Kink for Micellar Properties.

Authors:  Manabendra Das; Yang Du; Orquidea Ribeiro; Parameswaran Hariharan; Jonas S Mortensen; Dhabaleswar Patra; Georgios Skiniotis; Claus J Loland; Lan Guan; Brian K Kobilka; Bernadette Byrne; Pil Seok Chae
Journal:  J Am Chem Soc       Date:  2017-02-20       Impact factor: 15.419

4.  Data-directed top-down Fourier-transform mass spectrometry of a large integral membrane protein complex: photosystem II from Galdieria sulphuraria.

Authors:  Balakumar Thangaraj; Christopher M Ryan; Puneet Souda; Kirsten Krause; Kym F Faull; Andreas P M Weber; Petra Fromme; Julian P Whitelegge
Journal:  Proteomics       Date:  2010-10       Impact factor: 3.984

5.  Novel Xylene-Linked Maltoside Amphiphiles (XMAs) for Membrane Protein Stabilisation.

Authors:  Kyung Ho Cho; Yang Du; Nicola J Scull; Parameswaran Hariharan; Kamil Gotfryd; Claus J Loland; Lan Guan; Bernadette Byrne; Brian K Kobilka; Pil Seok Chae
Journal:  Chemistry       Date:  2015-05-26       Impact factor: 5.236

6.  A novel metal transporter mediating manganese export (MntX) regulates the Mn to Fe intracellular ratio and Neisseria meningitidis virulence.

Authors:  Frédéric J Veyrier; Ivo G Boneca; Mathieu F Cellier; Muhamed-Kheir Taha
Journal:  PLoS Pathog       Date:  2011-09-29       Impact factor: 6.823

Review 7.  Mechanistic studies of the biogenesis and folding of outer membrane proteins in vitro and in vivo: what have we learned to date?

Authors:  Lindsay M McMorran; David J Brockwell; Sheena E Radford
Journal:  Arch Biochem Biophys       Date:  2014-03-05       Impact factor: 4.013

8.  Metazoans evolved by taking domains from soluble proteins to expand intercellular communication network.

Authors:  Hyun-Jun Nam; Inhae Kim; James U Bowie; Sanguk Kim
Journal:  Sci Rep       Date:  2015-04-29       Impact factor: 4.379

Review 9.  Membrane protein structure determination - the next generation.

Authors:  Isabel Moraes; Gwyndaf Evans; Juan Sanchez-Weatherby; Simon Newstead; Patrick D Shaw Stewart
Journal:  Biochim Biophys Acta       Date:  2013-07-13

10.  A Class of Rigid Linker-bearing Glucosides for Membrane Protein Structural Study.

Authors:  Aiman Sadaf; Jonas S Mortensen; Stefano Capaldi; Elena Tikhonova; Parameswaran Hariharan; Orquidea de Castro Ribeiro; Claus J Loland; Lan Guan; Bernadette Byrne; Pil Seok Chae
Journal:  Chem Sci       Date:  2015-12-16       Impact factor: 9.825

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