Literature DB >> 19940846

The pharmacogenomics of membrane transporters project: research at the interface of genomics and transporter pharmacology.

D L Kroetz1, S W Yee, K M Giacomini.   

Abstract

Since the cloning of the first membrane transporter, our understanding of the role of transporters in clinical drug disposition and response has grown enormously. In parallel, large-scale genome-wide variation studies and the emerging field of pharmacogenomics have ushered in a new understanding of variations in drug response. At the crossroads of pharmacogenomics and transporter biology is the National Institutes of Health-funded Pharmacogenomics of Membrane Transporters (PMT) project, centered at the University of California, San Francisco.

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Year:  2009        PMID: 19940846      PMCID: PMC2923224          DOI: 10.1038/clpt.2009.226

Source DB:  PubMed          Journal:  Clin Pharmacol Ther        ISSN: 0009-9236            Impact factor:   6.875


  34 in total

1.  Natural variation in human membrane transporter genes reveals evolutionary and functional constraints.

Authors:  Maya K Leabman; Conrad C Huang; Joseph DeYoung; Elaine J Carlson; Travis R Taylor; Melanie de la Cruz; Susan J Johns; Doug Stryke; Michiko Kawamoto; Thomas J Urban; Deanna L Kroetz; Thomas E Ferrin; Andrew G Clark; Neil Risch; Ira Herskowitz; Kathleen M Giacomini
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-28       Impact factor: 11.205

2.  Screening a large reference sample to identify very low frequency sequence variants: comparisons between two genes.

Authors:  C E Glatt; J A DeYoung; S Delgado; S K Service; K M Giacomini; R H Edwards; N Risch; N B Freimer
Journal:  Nat Genet       Date:  2001-04       Impact factor: 38.330

3.  Haplotype structure and ethnic-specific allele frequencies at the OCTN locus: implications for the genetics of Crohn's disease.

Authors:  Thomas J Urban; Kathleen M Giacomini; Neil Risch
Journal:  Inflamm Bowel Dis       Date:  2005-01       Impact factor: 5.325

4.  Functional analysis of polymorphisms in the organic anion transporter, SLC22A6 (OAT1).

Authors:  Tomoe Fujita; Chaline Brown; Elaine J Carlson; Travis Taylor; Melanie de la Cruz; Susan J Johns; Doug Stryke; Michiko Kawamoto; Kazumi Fujita; Richard Castro; Chung-Wen Chen; Emil T Lin; Claire M Brett; Esteban Gonzalez Burchard; Thomas E Ferrin; Conrad C Huang; Maya K Leabman; Kathleen M Giacomini
Journal:  Pharmacogenet Genomics       Date:  2005-04       Impact factor: 2.089

5.  Genetic analysis and functional characterization of polymorphisms in the human concentrative nucleoside transporter, CNT2.

Authors:  Ryan P Owen; Jennifer H Gray; Travis R Taylor; Elaine J Carlson; Conrad C Huang; Michiko Kawamoto; Susan J Johns; Doug Stryke; Thomas E Ferrin; Kathleen M Giacomini
Journal:  Pharmacogenet Genomics       Date:  2005-02       Impact factor: 2.089

6.  Evolutionary conservation predicts function of variants of the human organic cation transporter, OCT1.

Authors:  Yan Shu; Maya K Leabman; Bo Feng; Lara M Mangravite; Conrad C Huang; Doug Stryke; Michiko Kawamoto; Susan J Johns; Joseph DeYoung; Elaine Carlson; Thomas E Ferrin; Ira Herskowitz; Kathleen M Giacomini
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-28       Impact factor: 11.205

7.  Functional and genetic diversity in the concentrative nucleoside transporter, CNT1, in human populations.

Authors:  Jennifer H Gray; Lara M Mangravite; Ryan P Owen; Thomas J Urban; Wendy Chan; Elaine J Carlson; Conrad C Huang; Michiko Kawamoto; Susan J Johns; Douglas Stryke; Thomas E Ferrin; Kathleen M Giacomini
Journal:  Mol Pharmacol       Date:  2004-03       Impact factor: 4.436

8.  Polymorphisms in a human kidney xenobiotic transporter, OCT2, exhibit altered function.

Authors:  Maya K Leabman; Conrad C Huang; Michiko Kawamoto; Susan J Johns; Douglas Stryke; Thomas E Ferrin; Joseph DeYoung; Travis Taylor; Andrew G Clark; Ira Herskowitz; Kathleen M Giacomini
Journal:  Pharmacogenetics       Date:  2002-07

9.  The effect of rare human sequence variants on the function of vesicular monoamine transporter 2.

Authors:  Jonathon Burman; Cindy H Tran; Charles Glatt; Nelson B Freimer; Robert H Edwards
Journal:  Pharmacogenetics       Date:  2004-09

10.  Genetic variants of the human H+/dipeptide transporter PEPT2: analysis of haplotype functions.

Authors:  Julia Pinsonneault; Carsten Uhd Nielsen; Wolfgang Sadée
Journal:  J Pharmacol Exp Ther       Date:  2004-07-28       Impact factor: 4.030

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  20 in total

Review 1.  Transgenic mice and metabolomics for study of hepatic xenobiotic metabolism and toxicity.

Authors:  Frank J Gonzalez; Zhong-Ze Fang; Xiaochao Ma
Journal:  Expert Opin Drug Metab Toxicol       Date:  2015-04-02       Impact factor: 4.481

2.  Pharmacogenomics of membrane transporters: past, present and future.

Authors:  Sook Wah Yee; Ligong Chen; Kathleen M Giacomini
Journal:  Pharmacogenomics       Date:  2010-04       Impact factor: 2.533

3.  Next generation genome-wide association tool: design and coverage of a high-throughput European-optimized SNP array.

Authors:  Thomas J Hoffmann; Mark N Kvale; Stephanie E Hesselson; Yiping Zhan; Christine Aquino; Yang Cao; Simon Cawley; Elaine Chung; Sheryl Connell; Jasmin Eshragh; Marcia Ewing; Jeremy Gollub; Mary Henderson; Earl Hubbell; Carlos Iribarren; Jay Kaufman; Richard Z Lao; Yontao Lu; Dana Ludwig; Gurpreet K Mathauda; William McGuire; Gangwu Mei; Sunita Miles; Matthew M Purdy; Charles Quesenberry; Dilrini Ranatunga; Sarah Rowell; Marianne Sadler; Michael H Shapero; Ling Shen; Tanushree R Shenoy; David Smethurst; Stephen K Van den Eeden; Larry Walter; Eunice Wan; Reid Wearley; Teresa Webster; Christopher C Wen; Li Weng; Rachel A Whitmer; Alan Williams; Simon C Wong; Chia Zau; Andrea Finn; Catherine Schaefer; Pui-Yan Kwok; Neil Risch
Journal:  Genomics       Date:  2011-04-30       Impact factor: 5.736

4.  Distribution of glycylsarcosine and cefadroxil among cerebrospinal fluid, choroid plexus, and brain parenchyma after intracerebroventricular injection is markedly different between wild-type and Pept2 null mice.

Authors:  David E Smith; Yongjun Hu; Hong Shen; Tavarekere N Nagaraja; Joseph D Fenstermacher; Richard F Keep
Journal:  J Cereb Blood Flow Metab       Date:  2010-06-23       Impact factor: 6.200

5.  Rare Variants in the ABCG2 Promoter Modulate In Vivo Activity.

Authors:  Rachel J Eclov; Mee J Kim; Robin Smith; Nadav Ahituv; Deanna L Kroetz
Journal:  Drug Metab Dispos       Date:  2018-02-21       Impact factor: 3.922

Review 6.  Influence of Transporter Polymorphisms on Drug Disposition and Response: A Perspective From the International Transporter Consortium.

Authors:  Sook Wah Yee; Deanna J Brackman; Elizabeth A Ennis; Yuichi Sugiyama; Landry K Kamdem; Rebecca Blanchard; Aleksandra Galetin; Lei Zhang; Kathleen M Giacomini
Journal:  Clin Pharmacol Ther       Date:  2018-05-31       Impact factor: 6.875

7.  ABCG2 regulatory single-nucleotide polymorphisms alter in vivo enhancer activity and expression.

Authors:  Rachel J Eclov; Mee J Kim; Aparna Chhibber; Robin P Smith; Nadav Ahituv; Deanna L Kroetz
Journal:  Pharmacogenet Genomics       Date:  2017-12       Impact factor: 2.089

8.  Design and coverage of high throughput genotyping arrays optimized for individuals of East Asian, African American, and Latino race/ethnicity using imputation and a novel hybrid SNP selection algorithm.

Authors:  Thomas J Hoffmann; Yiping Zhan; Mark N Kvale; Stephanie E Hesselson; Jeremy Gollub; Carlos Iribarren; Yontao Lu; Gangwu Mei; Matthew M Purdy; Charles Quesenberry; Sarah Rowell; Michael H Shapero; David Smethurst; Carol P Somkin; Stephen K Van den Eeden; Larry Walter; Teresa Webster; Rachel A Whitmer; Andrea Finn; Catherine Schaefer; Pui-Yan Kwok; Neil Risch
Journal:  Genomics       Date:  2011-08-28       Impact factor: 5.736

Review 9.  Databases in the area of pharmacogenetics.

Authors:  Sarah C Sim; Russ B Altman; Magnus Ingelman-Sundberg
Journal:  Hum Mutat       Date:  2011-04-05       Impact factor: 4.878

10.  Expression of six drug transporters in vaginal, cervical, and colorectal tissues: Implications for drug disposition in HIV prevention.

Authors:  Melanie R Nicol; Yuri Fedoriw; Michelle Mathews; Heather M A Prince; Kristine B Patterson; Elizabeth Geller; Katie Mollan; Stephanie Mathews; Deanna L Kroetz; Angela D M Kashuba
Journal:  J Clin Pharmacol       Date:  2014-01-02       Impact factor: 3.126

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