Literature DB >> 19937845

Beyond profiling: using ADMET models to guide decisions.

Matthew Segall1, Edmund Champness, Olga Obrezanova, Chris Leeding.   

Abstract

ADMET Models, whether in silico or in vitro, are commonly used to 'profile' molecules, to identify potential liabilities or filter out molecules expected to have undesirable properties. While useful, this is the most basic application of such models. Here, we will show how models may be used to go 'beyond profiling' to guide key decisions in drug discovery. For example, selection of chemical series to focus resources with confidence or design of improved molecules targeting structural modifications to improve key properties. To prioritise molecules and chemical series, the success criteria for properties and their relative importance to a project's objective must be defined. Data from models (experimental or predicted) may then be used to assess each molecule's balance of properties against those requirements. However, to make decisions with confidence, the uncertainties in all of the data must also be considered. In silico models encode information regarding the relationship between molecular structure and properties. This is used to predict the property value of a novel molecule. However, further interpretation can yield information on the contributions of different groups in a molecule to the property and the sensitivity of the property to structural changes. Visualising this information can guide the redesign process. In this article, we describe methods to achieve these goals and drive drug-discovery decisions and illustrate the results with practical examples.

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Year:  2009        PMID: 19937845     DOI: 10.1002/cbdv.200900148

Source DB:  PubMed          Journal:  Chem Biodivers        ISSN: 1612-1872            Impact factor:   2.408


  11 in total

1.  Making priors a priority.

Authors:  Matthew Segall; Andrew Chadwick
Journal:  J Comput Aided Mol Des       Date:  2010-10-16       Impact factor: 3.686

2.  Exploring Modifications of an HIV-1 Capsid Inhibitor: Design, Synthesis, and Mechanism of Action.

Authors:  Jimmy P Xu; Ashwanth C Francis; Megan E Meuser; Marie Mankowski; Roger G Ptak; Adel A Rashad; Gregory B Melikyan; Simon Cocklin
Journal:  J Drug Des Res       Date:  2018-08-13

Review 3.  Chemical predictive modelling to improve compound quality.

Authors:  John G Cumming; Andrew M Davis; Sorel Muresan; Markus Haeberlein; Hongming Chen
Journal:  Nat Rev Drug Discov       Date:  2013-12       Impact factor: 84.694

4.  Discovery and optimization of novel small-molecule HIV-1 entry inhibitors using field-based virtual screening and bioisosteric replacement.

Authors:  Marina Tuyishime; Matt Danish; Amy Princiotto; Marie K Mankowski; Rae Lawrence; Henry-Georges Lombart; Kirill Esikov; Joel Berniac; Kuang Liang; Jingjing Ji; Roger G Ptak; Navid Madani; Simon Cocklin
Journal:  Bioorg Med Chem Lett       Date:  2014-12-01       Impact factor: 2.823

5.  QSAR with experimental and predictive distributions: an information theoretic approach for assessing model quality.

Authors:  David J Wood; Lars Carlsson; Martin Eklund; Ulf Norinder; Jonna Stålring
Journal:  J Comput Aided Mol Des       Date:  2013-03-16       Impact factor: 3.686

Review 6.  On exploring structure-activity relationships.

Authors:  Rajarshi Guha
Journal:  Methods Mol Biol       Date:  2013

7.  Galeon: A Biologically Active Molecule with In Silico Metabolite Prediction, In Vitro Metabolic Profiling in Rat Liver Microsomes, and In Silico Binding Mechanisms with CYP450 Isoforms.

Authors:  A F M Motiur Rahman; Wencui Yin; Adnan A Kadi; Yurngdong Jahng
Journal:  Molecules       Date:  2020-12-13       Impact factor: 4.411

8.  A survey of quantitative descriptions of molecular structure.

Authors:  Rajarshi Guha; Egon Willighagen
Journal:  Curr Top Med Chem       Date:  2012       Impact factor: 3.295

9.  Similarity maps - a visualization strategy for molecular fingerprints and machine-learning methods.

Authors:  Sereina Riniker; Gregory A Landrum
Journal:  J Cheminform       Date:  2013-09-24       Impact factor: 5.514

10.  Composition and Orientation of the Core Region of Novel HIV-1 Entry Inhibitors Influences Metabolic Stability.

Authors:  Rama Karadsheh; Megan E Meuser; Simon Cocklin
Journal:  Molecules       Date:  2020-03-21       Impact factor: 4.411

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