Literature DB >> 25454268

Discovery and optimization of novel small-molecule HIV-1 entry inhibitors using field-based virtual screening and bioisosteric replacement.

Marina Tuyishime, Matt Danish, Amy Princiotto, Marie K Mankowski, Rae Lawrence, Henry-Georges Lombart, Kirill Esikov, Joel Berniac, Kuang Liang, Jingjing Ji, Roger G Ptak, Navid Madani, Simon Cocklin.   

Abstract

With the emergence of drug-resistant strains and the cumulative toxicities associated with current therapies, demand remains for new inhibitors of HIV-1 replication. The inhibition of HIV-1 entry is an attractive, yet underexploited therapeutic approach with implications for salvage and preexposure prophylactic regimens, as well as topical microbicides. Using the combination of a field-derived bioactive conformation template to perform virtual screening and iterative bioisosteric replacements, coupled with in silico predictions of absorption, distribution, metabolism, and excretion, we have identified new leads for HIV-1 entry inhibitors.

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Year:  2014        PMID: 25454268      PMCID: PMC4355043          DOI: 10.1016/j.bmcl.2014.10.027

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  40 in total

1.  Mode of action for linear peptide inhibitors of HIV-1 gp120 interactions.

Authors:  Alyssa C Biorn; Simon Cocklin; Navid Madani; Zhihai Si; Tijana Ivanovic; James Samanen; Donald I Van Ryk; Ralph Pantophlet; Dennis R Burton; Ernesto Freire; Joseph Sodroski; Irwin M Chaiken
Journal:  Biochemistry       Date:  2004-02-24       Impact factor: 3.162

2.  Novel lead structures for p38 MAP kinase via FieldScreen virtual screening.

Authors:  Timothy J Cheeseright; Melanie Holm; Frank Lehmann; Sabine Luik; Marcia Göttert; James L Melville; Stefan Laufer
Journal:  J Med Chem       Date:  2009-07-23       Impact factor: 7.446

3.  Beyond profiling: using ADMET models to guide decisions.

Authors:  Matthew Segall; Edmund Champness; Olga Obrezanova; Chris Leeding
Journal:  Chem Biodivers       Date:  2009-11       Impact factor: 2.408

4.  Probing the structure of the human immunodeficiency virus surface glycoprotein gp120 with a panel of monoclonal antibodies.

Authors:  J P Moore; Q J Sattentau; R Wyatt; J Sodroski
Journal:  J Virol       Date:  1994-01       Impact factor: 5.103

5.  A conserved HIV gp120 glycoprotein structure involved in chemokine receptor binding.

Authors:  C D Rizzuto; R Wyatt; N Hernández-Ramos; Y Sun; P D Kwong; W A Hendrickson; J Sodroski
Journal:  Science       Date:  1998-06-19       Impact factor: 47.728

Review 6.  High content pharmacophores from molecular fields: a biologically relevant method for comparing and understanding ligands.

Authors:  Timothy J Cheeseright; Mark D Mackey; Robert A Scoffin
Journal:  Curr Comput Aided Drug Des       Date:  2011-09-01       Impact factor: 1.606

7.  Antibody neutralization and escape by HIV-1.

Authors:  Xiping Wei; Julie M Decker; Shuyi Wang; Huxiong Hui; John C Kappes; Xiaoyun Wu; Jesus F Salazar-Gonzalez; Maria G Salazar; J Michael Kilby; Michael S Saag; Natalia L Komarova; Martin A Nowak; Beatrice H Hahn; Peter D Kwong; George M Shaw
Journal:  Nature       Date:  2003-03-20       Impact factor: 49.962

8.  Identification of novel small-molecule agonists for human formyl peptide receptors and pharmacophore models of their recognition.

Authors:  Liliya N Kirpotina; Andrei I Khlebnikov; Igor A Schepetkin; Richard D Ye; Marie-Josèphe Rabiet; Mark A Jutila; Mark T Quinn
Journal:  Mol Pharmacol       Date:  2009-11-10       Impact factor: 4.436

9.  Discovery of a small-molecule antiviral targeting the HIV-1 matrix protein.

Authors:  Isaac Zentner; Luz-Jeannette Sierra; Lina Maciunas; Andrei Vinnik; Peter Fedichev; Marie K Mankowski; Roger G Ptak; Julio Martín-García; Simon Cocklin
Journal:  Bioorg Med Chem Lett       Date:  2012-11-29       Impact factor: 2.823

10.  Computer-assisted analysis of envelope protein sequences of seven human immunodeficiency virus isolates: prediction of antigenic epitopes in conserved and variable regions.

Authors:  S Modrow; B H Hahn; G M Shaw; R C Gallo; F Wong-Staal; H Wolf
Journal:  J Virol       Date:  1987-02       Impact factor: 5.103

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  11 in total

1.  Exploring Modifications of an HIV-1 Capsid Inhibitor: Design, Synthesis, and Mechanism of Action.

Authors:  Jimmy P Xu; Ashwanth C Francis; Megan E Meuser; Marie Mankowski; Roger G Ptak; Adel A Rashad; Gregory B Melikyan; Simon Cocklin
Journal:  J Drug Des Res       Date:  2018-08-13

Review 2.  Human Immunodeficiency Virus Immune Cell Receptors, Coreceptors, and Cofactors: Implications for Prevention and Treatment.

Authors:  Andrew W Woodham; Joseph G Skeate; Adriana M Sanna; Julia R Taylor; Diane M Da Silva; Paula M Cannon; W Martin Kast
Journal:  AIDS Patient Care STDS       Date:  2016-07       Impact factor: 5.078

3.  Clade-Specific Alterations within the HIV-1 Capsid Protein with Implications for Nuclear Translocation.

Authors:  Alexej Dick; Megan E Meuser; Simon Cocklin
Journal:  Biomolecules       Date:  2022-05-12

4.  Identification of a small molecule HIV-1 inhibitor that targets the capsid hexamer.

Authors:  Jimmy P Xu; Jeffrey D Branson; Rae Lawrence; Simon Cocklin
Journal:  Bioorg Med Chem Lett       Date:  2015-12-25       Impact factor: 2.823

5.  Core chemotype diversification in the HIV-1 entry inhibitor class using field-based bioisosteric replacement.

Authors:  Marina Tuyishime; Rae Lawrence; Simon Cocklin
Journal:  Bioorg Med Chem Lett       Date:  2015-10-27       Impact factor: 2.823

6.  Rapid Optimization of the Metabolic Stability of a Human Immunodeficiency Virus Type-1 Capsid Inhibitor Using a Multistep Computational Workflow.

Authors:  Megan E Meuser; Poli Adi Narayana Reddy; Alexej Dick; Jean Marc Maurancy; Joseph M Salvino; Simon Cocklin
Journal:  J Med Chem       Date:  2021-03-22       Impact factor: 7.446

7.  New Synthesis, Structure and Analgesic Properties of Methyl 1-R-4-Methyl-2,2-Dioxo-1H-2λ⁶,1-Benzothiazine-3-Carboxylates.

Authors:  Liliana Azotla-Cruz; Irina V Lijanova; Igor V Ukrainets; Natalya V Likhanova; Octavio Olivares-Xometl; Natalya L Bereznyakova
Journal:  Sci Pharm       Date:  2017-01-12

8.  Field-Based Affinity Optimization of a Novel Azabicyclohexane Scaffold HIV-1 Entry Inhibitor.

Authors:  Megan E Meuser; Adel A Rashad; Gabriel Ozorowski; Alexej Dick; Andrew B Ward; Simon Cocklin
Journal:  Molecules       Date:  2019-04-22       Impact factor: 4.411

9.  Kinetic Characterization of Novel HIV-1 Entry Inhibitors: Discovery of a Relationship between Off-Rate and Potency.

Authors:  Megan E Meuser; Michael B Murphy; Adel A Rashad; Simon Cocklin
Journal:  Molecules       Date:  2018-08-03       Impact factor: 4.411

10.  Composition and Orientation of the Core Region of Novel HIV-1 Entry Inhibitors Influences Metabolic Stability.

Authors:  Rama Karadsheh; Megan E Meuser; Simon Cocklin
Journal:  Molecules       Date:  2020-03-21       Impact factor: 4.411

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