Literature DB >> 19929057

Theory for the three-dimensional Mercedes-Benz model of water.

Alan Bizjak1, Tomaz Urbic, Vojko Vlachy, Ken A Dill.   

Abstract

The two-dimensional Mercedes-Benz (MB) model of water has been widely studied, both by Monte Carlo simulations and by integral equation methods. Here, we study the three-dimensional (3D) MB model. We treat water as spheres that interact through Lennard-Jones potentials and through a tetrahedral Gaussian hydrogen bonding function. As the "right answer," we perform isothermal-isobaric Monte Carlo simulations on the 3D MB model for different pressures and temperatures. The purpose of this work is to develop and test Wertheim's Ornstein-Zernike integral equation and thermodynamic perturbation theories. The two analytical approaches are orders of magnitude more efficient than the Monte Carlo simulations. The ultimate goal is to find statistical mechanical theories that can efficiently predict the properties of orientationally complex molecules, such as water. Also, here, the 3D MB model simply serves as a useful workbench for testing such analytical approaches. For hot water, the analytical theories give accurate agreement with the computer simulations. For cold water, the agreement is not as good. Nevertheless, these approaches are qualitatively consistent with energies, volumes, heat capacities, compressibilities, and thermal expansion coefficients versus temperature and pressure. Such analytical approaches offer a promising route to a better understanding of water and also the aqueous solvation.

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Year:  2009        PMID: 19929057      PMCID: PMC2792327          DOI: 10.1063/1.3259970

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

1.  How ions affect the structure of water.

Authors:  Barbara Hribar; Noel T Southall; Vojko Vlachy; Ken A Dill
Journal:  J Am Chem Soc       Date:  2002-10-16       Impact factor: 15.419

2.  A reoptimization of the five-site water potential (TIP5P) for use with Ewald sums.

Authors:  Steven W Rick
Journal:  J Chem Phys       Date:  2004-04-01       Impact factor: 3.488

3.  Effect of hydrogen bonds on the thermodynamic behavior of liquid water.

Authors: 
Journal:  Phys Rev Lett       Date:  1994-09-19       Impact factor: 9.161

4.  Potential energy functions for atomic-level simulations of water and organic and biomolecular systems.

Authors:  William L Jorgensen; Julian Tirado-Rives
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

Review 5.  Specific ion effects at the air/water interface.

Authors:  Pavel Jungwirth; Douglas J Tobias
Journal:  Chem Rev       Date:  2006-04       Impact factor: 60.622

6.  Modeling multibody effects in ionic solutions with a concentration dependent dielectric permittivity.

Authors:  Berk Hess; Christian Holm; Nico van der Vegt
Journal:  Phys Rev Lett       Date:  2006-04-12       Impact factor: 9.161

7.  An improved thermodynamic perturbation theory for Mercedes-Benz water.

Authors:  T Urbic; V Vlachy; Yu V Kalyuzhnyi; K A Dill
Journal:  J Chem Phys       Date:  2007-11-07       Impact factor: 3.488

8.  Three-dimensional "Mercedes-Benz" model for water.

Authors:  Cristiano L Dias; Tapio Ala-Nissila; Martin Grant; Mikko Karttunen
Journal:  J Chem Phys       Date:  2009-08-07       Impact factor: 3.488

Review 9.  Modeling water, the hydrophobic effect, and ion solvation.

Authors:  Ken A Dill; Thomas M Truskett; Vojko Vlachy; Barbara Hribar-Lee
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

10.  Water revisited.

Authors:  F H Stillinger
Journal:  Science       Date:  1980-07-25       Impact factor: 47.728

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  13 in total

1.  The application of the thermodynamic perturbation theory to study the hydrophobic hydration.

Authors:  Tomaz Mohoric; Tomaz Urbic; Barbara Hribar-Lee
Journal:  J Chem Phys       Date:  2013-07-14       Impact factor: 3.488

2.  Explicit-water theory for the salt-specific effects and Hofmeister series in protein solutions.

Authors:  Yuriy V Kalyuzhnyi; Vojko Vlachy
Journal:  J Chem Phys       Date:  2016-06-07       Impact factor: 3.488

3.  Protein aggregation in salt solutions.

Authors:  Miha Kastelic; Yurij V Kalyuzhnyi; Barbara Hribar-Lee; Ken A Dill; Vojko Vlachy
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

4.  The hydrophobic effect in a simple isotropic water-like model: Monte Carlo study.

Authors:  Matej Huš; Tomaz Urbic
Journal:  J Chem Phys       Date:  2014-04-14       Impact factor: 3.488

5.  Hierarchy of anomalies in the two-dimensional Mercedes-Benz model of water.

Authors:  Tomaz Urbic; Ken A Dill
Journal:  Phys Rev E       Date:  2018-09-11       Impact factor: 2.529

6.  Core-softened fluids as a model for water and the hydrophobic effect.

Authors:  Matej Huš; Tomaz Urbic
Journal:  J Chem Phys       Date:  2013-09-21       Impact factor: 3.488

7.  A statistical mechanical theory for a two-dimensional model of water.

Authors:  Tomaz Urbic; Ken A Dill
Journal:  J Chem Phys       Date:  2010-06-14       Impact factor: 3.488

8.  Integral equation and thermodynamic perturbation theory for a two-dimensional model of chain-forming fluid.

Authors:  Tomaz Urbic
Journal:  J Mol Liq       Date:  2017-04-21       Impact factor: 6.165

9.  Coarse-Grained Molecular Models of Water: A Review.

Authors:  Kevin R Hadley; Clare McCabe
Journal:  Mol Simul       Date:  2012-07-04       Impact factor: 2.178

10.  Analytical model for three-dimensional Mercedes-Benz water molecules.

Authors:  T Urbic
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-06-25
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