Literature DB >> 19928925

A peptide tag system for facile purification and single-molecule immobilization.

Jin Huang1, Stanislav S Nagy, Akiko Koide, Ronald S Rock, Shohei Koide.   

Abstract

A peptide fusion tag and accompanying recombinant capture reagents have been developed on the basis of the peptide-PDZ domain interaction and affinity clamps, a new class of affinity reagent. This system allows for single-step purification under mild conditions and stable capture of a tagged protein. The subnanomolar affinity, high force resistance (>30 pN), small size ( approximately 25 kDa, approximately one-sixth of the size of IgG), and monomeric nature of the affinity clamp are all superior features for many applications, in particular single-molecule measurements.

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Year:  2009        PMID: 19928925      PMCID: PMC2795123          DOI: 10.1021/bi901756n

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

Review 1.  Streptavidin-biotin binding energetics.

Authors:  P S Stayton; S Freitag; L A Klumb; A Chilkoti; V Chu; J E Penzotti; R To; D Hyre; I Le Trong; T P Lybrand; R E Stenkamp
Journal:  Biomol Eng       Date:  1999-12-31

2.  Affinity of the monoclonal antibody M1 directed against the FLAG peptide.

Authors:  A Einhauer; A Jungbauer
Journal:  J Chromatogr A       Date:  2001-06-29       Impact factor: 4.759

3.  Origins of PDZ domain ligand specificity. Structure determination and mutagenesis of the Erbin PDZ domain.

Authors:  Nicholas J Skelton; Michael F T Koehler; Kerry Zobel; Wai Lee Wong; Sherry Yeh; M Theresa Pisabarro; Jian Ping Yin; Laurence A Lasky; Sachdev S Sidhu
Journal:  J Biol Chem       Date:  2002-11-20       Impact factor: 5.157

4.  Single-molecule DNA nanomanipulation: improved resolution through use of shorter DNA fragments.

Authors:  Andrey Revyakin; Richard H Ebright; Terence R Strick
Journal:  Nat Methods       Date:  2005-02       Impact factor: 28.547

Review 5.  Making the most of affinity tags.

Authors:  David S Waugh
Journal:  Trends Biotechnol       Date:  2005-06       Impact factor: 19.536

6.  Design of protein function leaps by directed domain interface evolution.

Authors:  Jin Huang; Akiko Koide; Koki Makabe; Shohei Koide
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-29       Impact factor: 11.205

7.  Folding-unfolding transitions in single titin molecules characterized with laser tweezers.

Authors:  M S Kellermayer; S B Smith; H L Granzier; C Bustamante
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

8.  Myosin VI is a processive motor with a large step size.

Authors:  R S Rock; S E Rice; A L Wells; T J Purcell; J A Spudich; H L Sweeney
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

9.  Structural basis for exquisite specificity of affinity clamps, synthetic binding proteins generated through directed domain-interface evolution.

Authors:  Jin Huang; Koki Makabe; Matthew Biancalana; Akiko Koide; Shohei Koide
Journal:  J Mol Biol       Date:  2009-07-30       Impact factor: 5.469

10.  Myosin-X, a novel myosin with pleckstrin homology domains, associates with regions of dynamic actin.

Authors:  J S Berg; B H Derfler; C M Pennisi; D P Corey; R E Cheney
Journal:  J Cell Sci       Date:  2000-10       Impact factor: 5.285

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  20 in total

1.  Bootstrapped Biocatalysis: Biofilm-Derived Materials as Reversibly Functionalizable Multienzyme Surfaces.

Authors:  Martin G Nussbaumer; Peter Q Nguyen; Pei K R Tay; Alexander Naydich; Erisa Hysi; Zsofia Botyanszki; Neel S Joshi
Journal:  ChemCatChem       Date:  2017-08-02       Impact factor: 5.686

2.  Nanochannel-based single molecule recycling.

Authors:  John F Lesoine; Prahnesh A Venkataraman; Peter C Maloney; Mark E Dumont; Lukas Novotny
Journal:  Nano Lett       Date:  2012-06-04       Impact factor: 11.189

3.  Peptide tag forming a rapid covalent bond to a protein, through engineering a bacterial adhesin.

Authors:  Bijan Zakeri; Jacob O Fierer; Emrah Celik; Emily C Chittock; Ulrich Schwarz-Linek; Vincent T Moy; Mark Howarth
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-24       Impact factor: 11.205

4.  Structured post-IQ domain governs selectivity of myosin X for fascin-actin bundles.

Authors:  Stanislav Nagy; Ronald S Rock
Journal:  J Biol Chem       Date:  2010-06-10       Impact factor: 5.157

Review 5.  Force probing of individual molecules inside the living cell is now a reality.

Authors:  Lene B Oddershede
Journal:  Nat Chem Biol       Date:  2012-11       Impact factor: 15.040

6.  Single-Molecule FRET to Measure Conformational Dynamics of DNA Mismatch Repair Proteins.

Authors:  J W Gauer; S LeBlanc; P Hao; R Qiu; B C Case; M Sakato; M M Hingorani; D A Erie; K R Weninger
Journal:  Methods Enzymol       Date:  2016-10-05       Impact factor: 1.600

7.  Mechanical coordination in motor ensembles revealed using engineered artificial myosin filaments.

Authors:  R F Hariadi; R F Sommese; A S Adhikari; R E Taylor; S Sutton; J A Spudich; S Sivaramakrishnan
Journal:  Nat Nanotechnol       Date:  2015-07-06       Impact factor: 39.213

8.  The stepping pattern of myosin X is adapted for processive motility on bundled actin.

Authors:  Benjamin L Ricca; Ronald S Rock
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

9.  Generation of high-performance binding proteins for peptide motifs by affinity clamping.

Authors:  Shohei Koide; Jin Huang
Journal:  Methods Enzymol       Date:  2013       Impact factor: 1.600

Review 10.  Single molecule studies of DNA mismatch repair.

Authors:  Dorothy A Erie; Keith R Weninger
Journal:  DNA Repair (Amst)       Date:  2014-04-18
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