Literature DB >> 19927746

Fungi evolved right on track.

Robert Lücking1, Sabine Huhndorf, Donald H Pfister, Eimy Rivas Plata, H Thorsten Lumbsch.   

Abstract

Dating of fungal divergences with molecular clocks thus far has yielded highly inconsistent results. The origin of fungi was estimated at between 660 million and up to 2.15 billion y ago, and the divergence of the two major lineages of higher fungi, Ascomycota and Basidiomycota, at between 390 million y and up to 1.5 billion y ago. Assuming that these inconsistencies stem from various causes, we reassessed the systematic placement of the most important fungal fossil, Paleopyrenomycites, and recalibrated internally unconstrained, published molecular clock trees by applying uniform calibration points. As a result the origin of fungi was re-estimated at between 760 million and 1.06 billion y ago and the origin of the Ascomycota at 500-650 million y ago. These dates are much more consistent than previous estimates, even if based on the same phylogenies and molecular clock trees, and they are also much better in line with the fossil record of fungi and plants and the ecological interdependence between filamentous fungi and land plants. Our results do not provide evidence to suggest the existence of ancient protolichens as an alternative to explain the ecology of early terrestrial fungi in the absence of land plants.

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Year:  2009        PMID: 19927746     DOI: 10.3852/09-016

Source DB:  PubMed          Journal:  Mycologia        ISSN: 0027-5514            Impact factor:   2.696


  72 in total

Review 1.  The spectrum of fungi that infects humans.

Authors:  Julia R Köhler; Arturo Casadevall; John Perfect
Journal:  Cold Spring Harb Perspect Med       Date:  2014-11-03       Impact factor: 6.915

2.  Evolution of PAS domains and PAS-containing genes in eukaryotes.

Authors:  Qiming Mei; Volodymyr Dvornyk
Journal:  Chromosoma       Date:  2014-04-04       Impact factor: 4.316

3.  The macroevolutionary dynamics of symbiotic and phenotypic diversification in lichens.

Authors:  Matthew P Nelsen; Robert Lücking; C Kevin Boyce; H Thorsten Lumbsch; Richard H Ree
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-13       Impact factor: 11.205

4.  Fertile Prototaxites taiti: a basal ascomycete with inoperculate, polysporous asci lacking croziers.

Authors:  Rosmarie Honegger; Dianne Edwards; Lindsey Axe; Christine Strullu-Derrien
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-02-05       Impact factor: 6.237

5.  Fungi and fungal interactions in the Rhynie chert: a review of the evidence, with the description of Perexiflasca tayloriana gen. et sp. nov..

Authors:  Michael Krings; Carla J Harper; Edith L Taylor
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-02-05       Impact factor: 6.237

6.  Widespread adenine N6-methylation of active genes in fungi.

Authors:  Stephen J Mondo; Richard O Dannebaum; Rita C Kuo; Katherine B Louie; Adam J Bewick; Kurt LaButti; Sajeet Haridas; Alan Kuo; Asaf Salamov; Steven R Ahrendt; Rebecca Lau; Benjamin P Bowen; Anna Lipzen; William Sullivan; Bill B Andreopoulos; Alicia Clum; Erika Lindquist; Christopher Daum; Trent R Northen; Govindarajan Kunde-Ramamoorthy; Robert J Schmitz; Andrii Gryganskyi; David Culley; Jon Magnuson; Timothy Y James; Michelle A O'Malley; Jason E Stajich; Joseph W Spatafora; Axel Visel; Igor V Grigoriev
Journal:  Nat Genet       Date:  2017-05-08       Impact factor: 38.330

7.  A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species.

Authors:  E W A Boehm; G K Mugambi; A N Miller; S M Huhndorf; S Marincowitz; J W Spatafora; C L Schoch
Journal:  Stud Mycol       Date:  2009       Impact factor: 16.097

8.  Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses.

Authors:  Richard J O'Connell; Michael R Thon; Stéphane Hacquard; Stefan G Amyotte; Jochen Kleemann; Maria F Torres; Ulrike Damm; Ester A Buiate; Lynn Epstein; Noam Alkan; Janine Altmüller; Lucia Alvarado-Balderrama; Christopher A Bauser; Christian Becker; Bruce W Birren; Zehua Chen; Jaeyoung Choi; Jo Anne Crouch; Jonathan P Duvick; Mark A Farman; Pamela Gan; David Heiman; Bernard Henrissat; Richard J Howard; Mehdi Kabbage; Christian Koch; Barbara Kracher; Yasuyuki Kubo; Audrey D Law; Marc-Henri Lebrun; Yong-Hwan Lee; Itay Miyara; Neil Moore; Ulla Neumann; Karl Nordström; Daniel G Panaccione; Ralph Panstruga; Michael Place; Robert H Proctor; Dov Prusky; Gabriel Rech; Richard Reinhardt; Jeffrey A Rollins; Steve Rounsley; Christopher L Schardl; David C Schwartz; Narmada Shenoy; Ken Shirasu; Usha R Sikhakolli; Kurt Stüber; Serenella A Sukno; James A Sweigard; Yoshitaka Takano; Hiroyuki Takahara; Frances Trail; H Charlotte van der Does; Lars M Voll; Isa Will; Sarah Young; Qiandong Zeng; Jingze Zhang; Shiguo Zhou; Martin B Dickman; Paul Schulze-Lefert; Emiel Ver Loren van Themaat; Li-Jun Ma; Lisa J Vaillancourt
Journal:  Nat Genet       Date:  2012-08-12       Impact factor: 38.330

9.  The genome of the anaerobic fungus Orpinomyces sp. strain C1A reveals the unique evolutionary history of a remarkable plant biomass degrader.

Authors:  Noha H Youssef; M B Couger; Christopher G Struchtemeyer; Audra S Liggenstoffer; Rolf A Prade; Fares Z Najar; Hasan K Atiyeh; Mark R Wilkins; Mostafa S Elshahed
Journal:  Appl Environ Microbiol       Date:  2013-05-24       Impact factor: 4.792

10.  Locus-aware decomposition of gene trees with respect to polytomous species trees.

Authors:  Michał Aleksander Ciach; Anna Muszewska; Paweł Górecki
Journal:  Algorithms Mol Biol       Date:  2018-06-04       Impact factor: 1.405

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