Literature DB >> 19927313

Single-molecule genomics.

Frank McCaughan1, Paul H Dear.   

Abstract

The term 'single-molecule genomics' (SMG) describes a group of molecular methods in which single molecules are detected or sequenced. The focus on the analysis of individual molecules distinguishes these techniques from more traditional methods, in which template DNA is cloned or PCR-amplified prior to analysis. Although technically challenging, the analysis of single molecules has the potential to play a major role in the delivery of truly personalized medicine. The two main subgroups of SMG methods are single-molecule digital PCR and single-molecule sequencing. Single-molecule PCR has a number of advantages over competing technologies, including improved detection of rare genetic variants and more precise analysis of copy-number variation, and is more easily adapted to the often small amount of material that is available in clinical samples. Single-molecule sequencing refers to a number of different methods that are mainly still in development but have the potential to make a huge impact on personalized medicine in the future.

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Mesh:

Year:  2010        PMID: 19927313     DOI: 10.1002/path.2647

Source DB:  PubMed          Journal:  J Pathol        ISSN: 0022-3417            Impact factor:   7.996


  9 in total

1.  Innovative diagnostic technologies and their significance for personalized medicine.

Authors:  Kewal K Jain
Journal:  Mol Diagn Ther       Date:  2010-06-01       Impact factor: 4.074

Review 2.  Variation in transcriptome size: are we getting the message?

Authors:  Jeremy E Coate; Jeff J Doyle
Journal:  Chromosoma       Date:  2014-11-26       Impact factor: 4.316

3.  A cell-free microtiter plate screen for improved [FeFe] hydrogenases.

Authors:  James A Stapleton; James R Swartz
Journal:  PLoS One       Date:  2010-05-10       Impact factor: 3.240

4.  Mitochondrial DNA variant discovery and evaluation in human Cardiomyopathies through next-generation sequencing.

Authors:  Michael V Zaragoza; Joseph Fass; Marta Diegoli; Dawei Lin; Eloisa Arbustini
Journal:  PLoS One       Date:  2010-08-20       Impact factor: 3.240

5.  Effect of the Bacillus atrophaeus subsp. globigii Spo0F H101R mutation on strain fitness.

Authors:  Doncho V Zhelev; Mia Hunt; Anna Le; Christopher Dupuis; Suelynn Ren; Henry S Gibbons
Journal:  Appl Environ Microbiol       Date:  2012-10-05       Impact factor: 4.792

Review 6.  The properties and applications of single-molecule DNA sequencing.

Authors:  John F Thompson; Patrice M Milos
Journal:  Genome Biol       Date:  2011-02-24       Impact factor: 13.583

7.  High-throughput droplet digital PCR system for absolute quantitation of DNA copy number.

Authors:  Benjamin J Hindson; Kevin D Ness; Donald A Masquelier; Phillip Belgrader; Nicholas J Heredia; Anthony J Makarewicz; Isaac J Bright; Michael Y Lucero; Amy L Hiddessen; Tina C Legler; Tyler K Kitano; Michael R Hodel; Jonathan F Petersen; Paul W Wyatt; Erin R Steenblock; Pallavi H Shah; Luc J Bousse; Camille B Troup; Jeffrey C Mellen; Dean K Wittmann; Nicholas G Erndt; Thomas H Cauley; Ryan T Koehler; Austin P So; Simant Dube; Klint A Rose; Luz Montesclaros; Shenglong Wang; David P Stumbo; Shawn P Hodges; Steven Romine; Fred P Milanovich; Helen E White; John F Regan; George A Karlin-Neumann; Christopher M Hindson; Serge Saxonov; Bill W Colston
Journal:  Anal Chem       Date:  2011-10-28       Impact factor: 6.986

8.  Single-molecule analysis of genome rearrangements in cancer.

Authors:  Jessica C M Pole; Frank McCaughan; Scott Newman; Karen D Howarth; Paul H Dear; Paul A W Edwards
Journal:  Nucleic Acids Res       Date:  2011-04-27       Impact factor: 16.971

9.  Quantitation of the latent HIV-1 reservoir from the sequence diversity in viral outgrowth assays.

Authors:  Art F Y Poon; Jessica L Prodger; Briana A Lynch; Jun Lai; Steven J Reynolds; Jingo Kasule; Adam A Capoferri; Susanna L Lamers; Christopher W Rodriguez; Daniel Bruno; Stephen F Porcella; Craig Martens; Thomas C Quinn; Andrew D Redd
Journal:  Retrovirology       Date:  2018-07-05       Impact factor: 4.602

  9 in total

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