Literature DB >> 1992480

Model for the structure of the lipid bilayer.

R W Pastor1, R M Venable, M Karplus.   

Abstract

A detailed model for the structure and dynamics of the interior of the lipid bilayer in the liquid crystal phase is presented. The model includes two classes of motion: (i) the internal dynamics of the chains, determined from Brownian dynamics simulations with a continuous version of the Marcelja mean-field potential, and (ii) noncollective reorientation (axial rotation and wobble) of the entire molecule, introduced by a cone model. The basic unit of the model is a single lipid chain with field parameters adjusted to fit the 2H order parameters and the frequency-dependent 13C NMR T1 relaxation times of dipalmitoyl phosphatidylcholine bilayers. The chain configurations obtained from the trajectory are used to construct a representation of the bilayer. The resulting lipid assembly is consistent with NMR, neutron diffraction, surface area, and density data. It indicates that a high degree of chain disorder and entanglement exists in biological membranes.

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Year:  1991        PMID: 1992480      PMCID: PMC50920          DOI: 10.1073/pnas.88.3.892

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  More on the motional state of lipid bilayer membranes: interpretation of order parameters obtained from nuclear magnetic resonance experiments.

Authors:  N O Petersen; S I Chan
Journal:  Biochemistry       Date:  1977-06-14       Impact factor: 3.162

2.  Anisotropic 2H NMR spin-lattice relaxation in L alpha-phase cerebroside bilayers.

Authors:  J B Speyer; R T Weber; S K Das Gupta; R G Griffin
Journal:  Biochemistry       Date:  1989-12-12       Impact factor: 3.162

3.  Chain ordering in liquid crystals. II. Structure of bilayer membranes.

Authors:  S Marcelja
Journal:  Biochim Biophys Acta       Date:  1974-10-29

4.  Structure of oriented lipid bilayers.

Authors:  Y K Levine; M H Wilkins
Journal:  Nat New Biol       Date:  1971-03-17

5.  Neutron diffraction studies on phosphatidylcholine model membranes. II. Chain conformation and segmental disorder.

Authors:  G Zaccai; G Büldt; A Seelig; J Seelig
Journal:  J Mol Biol       Date:  1979-11-15       Impact factor: 5.469

Review 6.  The description of membrane lipid conformation, order and dynamics by 2H-NMR.

Authors:  J H Davis
Journal:  Biochim Biophys Acta       Date:  1983-03-21

7.  Effect of librational motion on fluorescence depolarization and nuclear magnetic resonance relaxation in macromolecules and membranes.

Authors:  G Lipari; A Szabo
Journal:  Biophys J       Date:  1980-06       Impact factor: 4.033

8.  New view of lipid bilayer dynamics from 2H and 13C NMR relaxation time measurements.

Authors:  M F Brown; A A Ribeiro; G D Williams
Journal:  Proc Natl Acad Sci U S A       Date:  1983-07       Impact factor: 11.205

9.  Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles.

Authors:  B A Lewis; D M Engelman
Journal:  J Mol Biol       Date:  1983-05-15       Impact factor: 5.469

10.  Lecithin bilayers. Density measurement and molecular interactions.

Authors:  J F Nagle; D A Wilkinson
Journal:  Biophys J       Date:  1978-08       Impact factor: 4.033

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  29 in total

1.  Dynamic water networks in cytochrome C oxidase from Paracoccus denitrificans investigated by molecular dynamics simulations.

Authors:  Elena Olkhova; Michael C Hutter; Markus A Lill; Volkhard Helms; Hartmut Michel
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

2.  A molecular dynamics investigation of lipid bilayer perturbation by PIP2.

Authors:  Dmitry Lupyan; Mihaly Mezei; Diomedes E Logothetis; Roman Osman
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

Review 3.  Modeling kinetics of subcellular disposition of chemicals.

Authors:  Stefan Balaz
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

4.  Association free energy of dipalmitoylphosphatidylserines in a mixed dipalmitoylphosphatidylcholine membrane.

Authors:  Yoel Rodríguez; Mihaly Mezei; Roman Osman
Journal:  Biophys J       Date:  2007-02-02       Impact factor: 4.033

5.  Molecular dynamics of the KcsA K(+) channel in a bilayer membrane.

Authors:  S Bernèche; B Roux
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

6.  Structure and dynamics of an amphiphilic peptide in a lipid bilayer: a molecular dynamics study.

Authors:  K Belohorcová; J H Davis; T B Woolf; B Roux
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

7.  Molecular dynamics and (2)H-NMR study of the influence of an amphiphilic peptide on membrane order and dynamics.

Authors:  K Belohorcová; J Qian; J H Davis
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

8.  A comparison of DMPC- and DLPE-based lipid bilayers.

Authors:  K V Damodaran; K M Merz
Journal:  Biophys J       Date:  1994-04       Impact factor: 4.033

9.  Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. II. Distribution and packing of terminal methyl groups.

Authors:  M C Wiener; S H White
Journal:  Biophys J       Date:  1992-02       Impact factor: 4.033

10.  The transmembrane domain of Neu in a lipid bilayer: molecular dynamics simulations.

Authors:  Bryan M van der Ende; Frances J Sharom; James H Davis
Journal:  Eur Biophys J       Date:  2004-06-09       Impact factor: 1.733

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