Literature DB >> 19923743

Crystallization and preliminary crystallographic analysis of gallate dioxygenase DesB from Sphingobium sp. SYK-6.

Keisuke Sugimoto1, Yoshihiro Yamamoto, Siswanto Antoni, Miki Senda, Daisuke Kasai, Eiji Masai, Masao Fukuda, Toshiya Senda.   

Abstract

Gallate dioxygenase (DesB) from Sphingobium sp. SYK-6, which belongs to the type II extradiol dioxygenase family, was purified and crystallized using the hanging-drop vapour-diffusion method. Two crystal forms were obtained. The form I crystal belonged to space group C2, with unit-cell parameters a = 136.2, b = 53.6, c = 55.1 angstrom, beta = 112.8 degrees, and diffracted to 1.6 angstrom resolution. The form II crystal belonged to space group P2(1), with unit-cell parameters a = 56.2, b = 64.7, c = 116.1 angstrom, beta = 95.1 degrees, and diffracted to 1.9 angstrom resolution. A molecular-replacement calculation using LigAB as a search model yielded a satisfactory solution for both crystal forms.

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Year:  2009        PMID: 19923743      PMCID: PMC2777051          DOI: 10.1107/S1744309109041086

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  23 in total

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Authors:  X Peng; T Egashira; K Hanashiro; E Masai; S Nishikawa; Y Katayama; K Kimbara; M Fukuda
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  2 in total

1.  Anaerobic Protein Purification and Kinetic Analysis via Oxygen Electrode for Studying DesB Dioxygenase Activity and Inhibition.

Authors:  Stacy N Uchendu; Angelika Rafalowski; Erin F Cohn; Luke W Davoren; Erika A Taylor
Journal:  J Vis Exp       Date:  2018-10-03       Impact factor: 1.355

2.  Molecular mechanism of strict substrate specificity of an extradiol dioxygenase, DesB, derived from Sphingobium sp. SYK-6.

Authors:  Keisuke Sugimoto; Miki Senda; Daisuke Kasai; Masao Fukuda; Eiji Masai; Toshiya Senda
Journal:  PLoS One       Date:  2014-03-21       Impact factor: 3.240

  2 in total

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