Literature DB >> 10347082

Characterization of the meta-cleavage compound hydrolase gene involved in degradation of the lignin-related biphenyl structure by Sphingomonas paucimobilis SYK-6.

X Peng1, E Masai, Y Katayama, M Fukuda.   

Abstract

Sphingomonas paucimobilis SYK-6 has the ability to transform a lignin-related biphenyl compound, 2,2'-dihydroxy-3,3'-dimethoxy-5, 5'-dicarboxybiphenyl (DDVA), to 5-carboxyvanillic acid (5CVA) via 2, 2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl (OH-DDVA). In the 4.9-kb HindIII fragment containing the OH-DDVA meta-cleavage dioxygenase gene (ligZ), we found a novel hydrolase gene (ligY) responsible for the conversion of the meta-cleavage compound of OH-DDVA to 5CVA. Incorporation of 18O from H218O into 5CVA indicated there was a hydrolytic conversion of the OH-DDVA meta-cleavage compound to 5CVA. LigY exhibited hydrolase activity only toward the meta-cleavage compound of OH-DDVA, suggesting its restricted substrate specificity.

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Year:  1999        PMID： 10347082      PMCID： PMC91417          DOI： 10.1128/AEM.65.6.2789-2793.1999

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  17 in total

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Authors:  F M Menn; G J Zylstra; D T Gibson
Journal:  Gene       Date:  1991-07-31       Impact factor: 3.688

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Authors:  Y Noda; S Nishikawa; K Shiozuka; H Kadokura; H Nakajima; K Yoda; Y Katayama; N Morohoshi; T Haraguchi; M Yamasaki
Journal:  J Bacteriol       Date:  1990-05       Impact factor: 3.490

3.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

4.  Cloning of a gene cluster encoding biphenyl and chlorobiphenyl degradation in Pseudomonas pseudoalcaligenes.

Authors:  K Furukawa; T Miyazaki
Journal:  J Bacteriol       Date:  1986-05       Impact factor: 3.490

5.  Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102.

Authors:  K Kimbara; T Hashimoto; M Fukuda; T Koana; M Takagi; M Oishi; K Yano
Journal:  J Bacteriol       Date:  1989-05       Impact factor: 3.490

6.  Cloning and expression in Escherichia coli of the naphthalene degradation genes from plasmid NAH7.

Authors:  M A Schell
Journal:  J Bacteriol       Date:  1983-02       Impact factor: 3.490

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Authors:  J M Horn; S Harayama; K N Timmis
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8.  [ON CHLOROMETHYLATION OF O- AND NOVO-VANILLIN AND PREPARATION OF 4-HYDROXY-5-ALKOXY-ISOPHTHALALDEHYDE].

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Journal:  Arch Pharm Ber Dtsch Pharm Ges       Date:  1965-03

9.  Physically associated enzymes produce and metabolize 2-hydroxy-2,4-dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putida.

Authors:  S Harayama; M Rekik; K L Ngai; L N Ornston
Journal:  J Bacteriol       Date:  1989-11       Impact factor: 3.490

10.  Cloning and sequencing of the gene for a Pseudomonas paucimobilis enzyme that cleaves beta-aryl ether.

Authors:  E Masai; Y Katayama; S Kawai; S Nishikawa; M Yamasaki; N Morohoshi
Journal:  J Bacteriol       Date:  1991-12       Impact factor: 3.490
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  17 in total

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Authors:  H Hara; E Masai; Y Katayama; M Fukuda
Journal:  J Bacteriol       Date:  2000-12       Impact factor: 3.490

2.  A second 5-carboxyvanillate decarboxylase gene, ligW2, is important for lignin-related biphenyl catabolism in Sphingomonas paucimobilis SYK-6.

Authors:  Xue Peng; Eiji Masai; Daisuke Kasai; Keisuke Miyauchi; Yoshihiro Katayama; Masao Fukuda
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

3.  Crystallization and preliminary crystallographic analysis of gallate dioxygenase DesB from Sphingobium sp. SYK-6.

Authors:  Keisuke Sugimoto; Yoshihiro Yamamoto; Siswanto Antoni; Miki Senda; Daisuke Kasai; Eiji Masai; Masao Fukuda; Toshiya Senda
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-10-30

4.  Characterization of the 4-carboxy-4-hydroxy-2-oxoadipate aldolase gene and operon structure of the protocatechuate 4,5-cleavage pathway genes in Sphingomonas paucimobilis SYK-6.

Authors:  Hirofumi Hara; Eiji Masai; Keisuke Miyauchi; Yoshihiro Katayama; Masao Fukuda
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

5.  Overcoming a hemihedral twinning problem in tetrahydrofolate-dependent O-demethylase crystals by the microseeding method.

Authors:  Ayaka Harada; Yukari Sato; Naofumi Kamimura; Nagarajan Venugopalan; Eiji Masai; Toshiya Senda
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-11-30       Impact factor: 1.056

6.  Structural and Kinetic Characterization of the 4-Carboxy-2-hydroxymuconate Hydratase from the Gallate and Protocatechuate 4,5-Cleavage Pathways of Pseudomonas putida KT2440.

Authors:  Scott Mazurkewich; Ashley S Brott; Matthew S Kimber; Stephen Y K Seah
Journal:  J Biol Chem       Date:  2016-02-11       Impact factor: 5.157

7.  Characterization of the 5-carboxyvanillate decarboxylase gene and its role in lignin-related biphenyl catabolism in Sphingomonas paucimobilis SYK-6.

Authors:  Xue Peng; Eiji Masai; Hirotaka Kitayama; Kyo Harada; Yoshihiro Katayama; Masao Fukuda
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792

8.  Cloning and characterization of the ferulic acid catabolic genes of Sphingomonas paucimobilis SYK-6.

Authors:  Eiji Masai; Kyo Harada; Xue Peng; Hirotaka Kitayama; Yoshihiro Katayama; Masao Fukuda
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792

9.  Uncovering the protocatechuate 2,3-cleavage pathway genes.

Authors:  Daisuke Kasai; Toshihiro Fujinami; Tomokuni Abe; Kohei Mase; Yoshihiro Katayama; Masao Fukuda; Eiji Masai
Journal:  J Bacteriol       Date:  2009-08-28       Impact factor: 3.490

10.  Characterization of the 3-O-methylgallate dioxygenase gene and evidence of multiple 3-O-methylgallate catabolic pathways in Sphingomonas paucimobilis SYK-6.

Authors:  Daisuke Kasai; Eiji Masai; Keisuke Miyauchi; Yoshihiro Katayama; Masao Fukuda
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490
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