Literature DB >> 19923739

Purification, crystallization and preliminary X-ray analysis of bifunctional isocitrate dehydrogenase kinase/phosphatase in complex with its substrate, isocitrate dehydrogenase, from Escherichia coli.

Jimin Zheng1, Alan Xian Ji, Zongchao Jia.   

Abstract

Escherichia coli isocitrate dehydrogenase (ICDH) can be phosphorylated and dephosphorylated by a single bifunctional protein, isocitrate dehydrogenase kinase/phosphatase (AceK), which is encoded by the aceK gene. In order to investigate the regulatory mechanism of (de)phosphorylation of ICDH by AceK, AceK was successfully cocrystallized in complex with its intact protein substrate, ICDH, in the presence of ATP. The complex crystal was obtained by the hanging-drop vapour-diffusion technique using PEG 300 as a precipitant and magnesium sulfate as an additive. SDS-PAGE analysis of dissolved crystals showed that the crystals contained both AceK and ICDH proteins. The complex crystals diffracted to a resolution of 2.9 angstrom in space group P6(3), with unit-cell parameters a = b = 196.80, c = 156.46 angstrom.

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Year:  2009        PMID: 19923739      PMCID: PMC2777047          DOI: 10.1107/S1744309109038718

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

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Journal:  Science       Date:  1991-07-26       Impact factor: 47.728

4.  Regulation of isocitrate dehydrogenase by phosphorylation involves no long-range conformational change in the free enzyme.

Authors:  J H Hurley; A M Dean; P E Thorsness; D E Koshland; R M Stroud
Journal:  J Biol Chem       Date:  1990-03-05       Impact factor: 5.157

5.  Studies of the phosphorylation of Escherichia coli isocitrate dehydrogenase. Recognition of the enzyme by isocitrate dehydrogenase kinase/phosphatase and effects of phosphorylation on its structure and properties.

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Journal:  Biochimie       Date:  1989 Sep-Oct       Impact factor: 4.079

6.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

7.  Nucleotide sequence and expression of the aceK gene coding for isocitrate dehydrogenase kinase/phosphatase in Escherichia coli.

Authors:  J C Cortay; F Bleicher; C Rieul; H C Reeves; A J Cozzone
Journal:  J Bacteriol       Date:  1988-01       Impact factor: 3.490

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Authors:  J H Hurley; A M Dean; J L Sohl; D E Koshland; R M Stroud
Journal:  Science       Date:  1990-08-31       Impact factor: 47.728

9.  Electrostatic and steric contributions to regulation at the active site of isocitrate dehydrogenase.

Authors:  A M Dean; D E Koshland
Journal:  Science       Date:  1990-08-31       Impact factor: 47.728

10.  Purification, crystallization and preliminary X-ray analysis of isocitrate dehydrogenase kinase/phosphatase from Escherichia coli.

Authors:  Jimin Zheng; Daniel C Lee; Zongchao Jia
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-04-28
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  4 in total

1.  Structure of the bifunctional isocitrate dehydrogenase kinase/phosphatase.

Authors:  Jimin Zheng; Zongchao Jia
Journal:  Nature       Date:  2010-05-26       Impact factor: 49.962

2.  Dimerization and bifunctionality confer robustness to the isocitrate dehydrogenase regulatory system in Escherichia coli.

Authors:  Joseph P Dexter; Jeremy Gunawardena
Journal:  J Biol Chem       Date:  2012-11-28       Impact factor: 5.157

3.  Characterization of metal binding of bifunctional kinase/phosphatase AceK and implication in activity modulation.

Authors:  Xiaoying Zhang; Qingya Shen; Zhen Lei; Qianyi Wang; Jimin Zheng; Zongchao Jia
Journal:  Sci Rep       Date:  2019-06-24       Impact factor: 4.379

4.  Functional relevance of dynamic properties of Dimeric NADP-dependent Isocitrate Dehydrogenases.

Authors:  Rithvik Vinekar; Chandra Verma; Indira Ghosh
Journal:  BMC Bioinformatics       Date:  2012-12-13       Impact factor: 3.169

  4 in total

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