Literature DB >> 19923724

Structure of an Escherichia coli N-acetyl-D-neuraminic acid lyase mutant, E192N, in complex with pyruvate at 1.45 angstrom resolution.

Ivan Campeotto1, Stephen B Carr, Chi H Trinh, Adam S Nelson, Alan Berry, Simon E V Phillips, Arwen R Pearson.   

Abstract

The structure of a mutant variant of Escherichia coli N-acetyl-d-neuraminic acid lyase (NAL), E192N, in complex with pyruvate has been determined in a new crystal form. It crystallized in space group P2(1)2(1)2(1), with unit-cell parameters a = 78.3, b = 108.5, c = 148.3 angstrom. Pyruvate has been trapped in the active site as a Schiff base with the catalytic lysine (Lys165) without the need for reduction. Unlike the previously published crystallization conditions for the wild-type enzyme, in which a mother-liquor-derived sulfate ion is strongly bound in the catalytic pocket, the low-salt conditions described here will facilitate the determination of further E. coli NAL structures in complex with other activesite ligands.

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Year:  2009        PMID: 19923724      PMCID: PMC2777032          DOI: 10.1107/S1744309109037403

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

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Review 7.  The integration of macromolecular diffraction data.

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Review 8.  Scaling and assessment of data quality.

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2.  Structural basis for substrate specificity and mechanism of N-acetyl-D-neuraminic acid lyase from Pasteurella multocida.

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3.  X-ray-excited optical luminescence of protein crystals: a new tool for studying radiation damage during diffraction data collection.

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5.  Structural insights into the recovery of aldolase activity in N-acetylneuraminic acid lyase by replacement of the catalytically active lysine with γ-thialysine by using a chemical mutagenesis strategy.

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6.  Reaction mechanism of N-acetylneuraminic acid lyase revealed by a combination of crystallography, QM/MM simulation, and mutagenesis.

Authors:  Adam D Daniels; Ivan Campeotto; Marc W van der Kamp; Amanda H Bolt; Chi H Trinh; Simon E V Phillips; Arwen R Pearson; Adam Nelson; Adrian J Mulholland; Alan Berry
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7.  Crystal structures and kinetics of N-acetylneuraminate lyase from Fusobacterium nucleatum.

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8.  Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools.

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  8 in total

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