| Literature DB >> 19922630 |
Chong Shen1, Xiangfeng Lu, Yun Li, Qi Zhao, Xiaoli Liu, Liping Hou, Laiyuan Wang, Shufeng Chen, Jianfeng Huang, Dongfeng Gu.
Abstract
BACKGROUND: Elastogenesis of elastic extracellular matrix (ECM) which was recognized as a major component of blood vessels has been believed for a long time to play only a passive role in the dynamic vascular changes of typical hypertension. Emilin1 gene participated in the transcription of ECM's formation and was recognized to modulate links TGF-beta maturation to blood pressure homeostasis in animal study. Recently relevant advances urge further researches to investigate the role of Emilin1 gene in regulating TGF-beta signals involved in elastogenesis and vascular cell defects of essential hypertension (EH).Entities:
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Year: 2009 PMID: 19922630 PMCID: PMC2785781 DOI: 10.1186/1471-2350-10-118
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Location region, primer sequences, alleles, MAF and restriction enzymes for Emilin1 gene SNPs
| SNPs | Emilin1 region | Primer sequences | Alleles Major/Minor | MAF | Restriction enzymes | Digested bands (bp) |
|---|---|---|---|---|---|---|
| Rs3754734 | 5'fanking | F: 5' CGCTCTCACCCACAATACCT 3' | T/G | 0.367 | Apo I | T allele: 191 |
| Rs2011616 | Intron 1 | F: 5' TTGACCCCATCCAGTAATC 3' | G/A | 0.356 | Hinf I | G allele: 153 |
| Rs2304682 | Intron 5 | F: 5' TGCTTTGAAGTCCACGTAGCA | G/C | 0.367 | Taq I | G allele: 256 |
Underlined bases were mismatched
F: forward primer, R: reverse primer
MAF: Minor allele frequency.
Comparison of clinical characteristics between cases and controls in stage 1, stage 2 and joint analysis
| Stage 1 | Stage 2 | Joint analysis | ||||
|---|---|---|---|---|---|---|
| Characteristics | Cases (n = 503) | Controls (n = 490) | Cases (n = 814) | Controls (n = 779) | Cases (n = 1317) | Controls (n = 1269) |
| Male (%) | 52.1 | 52.4 | 48.3 | 51.5 | 49.7 | 51.9 |
| Age (years) | 53.6 ± 9.3 | 53.5 ± 9.2 | 54.5 ± 10.7 | 53.5 ± 9.7 | 54.2 ± 10.2 | 53.5 ± 9.5 |
| SBP (mmHg) | 177.07 ± 28.05*⊿ | 117.47 ± 11.64⊿ | 148.98 ± 17.84* | 113.81 ± 9.86 | 159.70 ± 26.13* | 115.21 ± 10.72 |
| DBP (mmHg) | 104.34 ± 12.28*⊿ | 75.05 ± 8.00⊿ | 90.62 ± 9.81* | 72.86 ± 7.57 | 95.85 ± 12.70* | 73.69 ± 7.81 |
| BMI (kg/m2) | 26.32 ± 3.85* | 24.30 ± 3.56 | 25.79 ± 3.52* | 23.85 ± 3.37 | 26.00 ± 3.67* | 24.03 ± 3.43 |
| TC (mg/dl) | 198.64 ± 37.50**** | 192.46 ± 40.06 | 197.34 ± 35.82* | 188.43 ± 38.15 | 197.84 ± 36.46* | 189.98 ± 38.93 |
| HDL-C (mg/dl) | 48.80 ± 11.83*** | 51.31 ± 13.07 | 48.38 ± 11.14* | 49.39 ± 11.43 | 48.54 ± 11.41** | 50.13 ± 12.12 |
| LDL-C (mg/dl) | 121.28 ± 32.64**** | 117.38 ± 32.98 | 122.08 ± 32.69* | 115.81 ± 34.36 | 121.78 ± 32.66* | 116.42 ± 33.83 |
| TG (mg/dl) | 150.58 ± 94.21* | 126.62 ± 76.42 | 134.94 ± 65.09* | 116.67 ± 55.37 | 140.92 ± 77.85* | 120.51 ± 64.47 |
| Glu (mg/dl) | 106.77 ± 32.40* | 99.09 ± 18.77 | 97.28 ± 10.90* | 94.80 ± 11.55 | 100.90 ± 22.25* | 96.46 ± 14.91 |
| Cr (μmol/l) | 70.83 ± 15.21**** | 68.92 ± 12.12 | 70.92 ± 13.34 | 71.03 ± 12.93 | 70.89 ± 14.08 | 70.21 ± 12.66 |
| Smokers (%) | 40.6 | 43.1 | 39.7 | 43.0 | 40.0 | 43.0 |
| Drinkers (%) | 34.4 | 33.5 | 30.1 | 28.4 | 31.7 | 30.3 |
| Anti-hypertensive medication (%) | 33.00 | 35.14 | 34.32 | |||
*P < 0.0001 for comparison with corresponding controls
**P < 0.001 for comparison with corresponding controls
***P < 0.01 for comparison with corresponding controls
****P < 0.05 for comparison with corresponding controls
⊿ P < 0.0001 for comparison with corresponding variables in stage 2
Genotype distributions and allele frequencies of the three SNPs tested in stage 1 and stage 2
| SNP | Group | Genotype | Allele | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WT | Ht+MT | ORa (95%CI) | Major/Minor | OR (95%CI) | P | ||||
| Stage 1 | rs3754734 | TT | TG+GG | T/G | |||||
| Case | 153 | 261+89 | 0.564/0.436 | ||||||
| Control | 188 | 214+88 | 1.336(1.013-1.762) | 0.040 | 0.602/0.398 | 1.17(0.98-1.40) | 0.082 | ||
| rs2011616 | GG | GA+AA | G/A | ||||||
| Case | 244 | 214+43 | 0.701/0.299 | ||||||
| Control | 270 | 181+39 | 1.348(1.035-1.756) | 0.027 | 0.736/0.264 | 1.19(0.98-1.45) | 0.082 | ||
| rs2304682 | GG | GC+CC | G/C | ||||||
| Case | 245 | 213+45 | 0.699/0.301 | ||||||
| Control | 251 | 196+43 | 1.034(0.796-1.343) | 0.840 | 0.712/0.288 | 1.07(0.88-1.29) | 0.511 | ||
| Stage 2 | rs3754734 | TT | TG+GG | T/G | |||||
| Case | 522 | 598+164 | 0.648/0.352 | ||||||
| Control | 533 | 570+163 | 0.980(0.832-1.155) | 0.811 | 0.646/0.354 | 0.992(0.885-1.112) | 0.894 | ||
| rs2011616 | GG | GA+AA | G/A | ||||||
| Case | 643 | 555+109 | 0.704/0.296 | ||||||
| Control | 608 | 541+110 | 1.004(0.853-1.181) | 0.963 | 0.698/0.302 | 1.032 (0.915-1.163) | 0.611 | ||
a. Adjusted for gender, age, BMI, TC, TG, Cr, HDL-C, LDL-C, Glu, smoking, drinking.
WT wide type, Ht heterozygote, MT mutant type
Analysis of age stratified association of rs3754734 and rs2011616 with hypertension in stage 2.
| SNP | Age group (years) | Genotype | Allele (Major/Minor) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Case | Control | OR*(95%CI) | P | case | control | OR (95%CI) | P | ||
| rs3754734 | TT/TG/GG | TT vs. TG/GG | T/G | T/G | |||||
| < 50 | 217/193/58 | 188/220/59 | 0.768(0.584-1.009) | 0.058 | 0.670/0.330 | 0.638/0.362 | 0.87(0.72-1.06) | 0.174 | |
| 50-60 | 161/183/48 | 172/191/55 | 0.985(0.735-1.320) | 0.919 | 0.644/0.356 | 0.640/0.360 | 1.02(0.83-1.25) | 0.876 | |
| > 60 | 175/222/58 | 173/159/49 | 1.346(1.003-1.806) | 0.048 | 0.629/0.371 | 0.663/0.337 | 0.86(0.70-1.05) | 0.151 | |
| rs2011616 | GG/GA/AA | GG vs. GA/AA | G/A | G/A | |||||
| < 50 | 245/177/41 | 212/213/38 | 0.745(0.568-0.977) | 0.033 | 0.720/0.280 | 0.688/0.312 | 1.17(0.96-1.43) | 0.126 | |
| 50-60 | 182/170/40 | 195/187/33 | 1.013(0.758-1.353) | 0.932 | 0.681/0.319 | 0.695/0.305 | 0.94(0.76-1.16) | 0.543 | |
| > 60 | 216/208/28 | 201/141/39 | 1.437(1.072-1.926) | 0.015 | 0.708/0.292 | 0.713/0.287 | 0.98(0.79-1.21) | 0.835 | |
*: Adjusted by gender, BMI, TC, TG, Cr, HDL-C, LDL-C, Glu, smoking, drinking.
Analysis of interaction of gene and age for EH.
| Genotype | Age group (years) | β | Standard error | P | OR (95% CI) | |
|---|---|---|---|---|---|---|
| Rs3754734 | TG/GG | < 50 | - | - | - | 1.00 |
| (TG/GG vs. TT) | TG/GG | 50-60 vs. < 50 | 0.252 | 0.203 | 0.215 | 1.286(0.864-1.916) |
| TG/GG | > 60 vs. < 50 | 0.564 | 0.204 | 0.006 | 1.758 (1.180-2.620) | |
| rs2011616 | GA/AA | < 50 | - | - | - | 1.00 |
| (GA/AA vs. GG) | GA/AA | 50-60 vs. < 50 | 0.315 | 0.202 | 0.118 | 1.371(0.923-2.035) |
| GA/AA | > 60 vs. < 50 | 0.643 | 0.202 | 0.001 | 1.903(1.281-2.825) |
*: Adjusted by gender, BMI, TC, TG, Cr, HDL-C, LDL-C, Glu, smoking, drinking.
Comparisons of quantitative traits of blood pressure between genotypes of rs3754734 and 2011616 by treatment stratification
| rs3754734 | rs2011616 | |||||
|---|---|---|---|---|---|---|
| Group | TT | TG | GG | GG | GA | AA |
| Treatment (n) | 196 | 200 | 52 | 225 | 190 | 33 |
| SBP (mmHg) | 174.03 ± 25.73 | 176.24 ± 20.72 | 184.20 ± 22.41* | 177.55 ± 25.95 | 174.78 ± 20.62 | 176.08 ± 18.89 |
| DBP (mmHg) | 102.45 ± 10.75 | 103.64 ± 9.55 | 105.93 ± 10.50* | 103.53 ± 10.94 | 103.11 ± 9.49 | 104.87 ± 9.57 |
| Non-treatment (n) | 881 | 960 | 274 | 1025 | 906 | 186 |
| SBP (mmHg) | 126.91 ± 21.15 | 128.65 ± 24.26 | 128.42 ± 20.86 | 127.60 ± 21.67 | 128.38 ± 22.52 | 127.54 ± 27.56 |
| DBP (mmHg) | 79.72 ± 12.23 | 80.19 ± 12.87 | 81.66 ± 12.37* | 80.37 ± 12.48 | 79.98 ± 12.77 | 80.57 ± 12.08 |
P > 0.05 for all test of homogeneity of variances
*P < 0.05 for linear term test