Literature DB >> 19917616

The box H/ACA ribonucleoprotein complex: interplay of RNA and protein structures in post-transcriptional RNA modification.

Tomoko Hamma1, Adrian R Ferré-D'Amaré.   

Abstract

The box H/ACA ribonucleoproteins (RNPs) are protein-RNA complexes responsible for pseudouridylation, the most abundant post-transcriptional modification of cellular RNAs. Integrity of its box H/ACA domain is also essential for assembly and stability of the human telomerase RNP. The recent publication of the complete box H/ACA RNP structures combined with the previously reported structures of the protein and RNA components makes it possible to deduce the structural accommodation that accompanies assembly of the full particle. This analysis reveals how the protein components distort the RNA component of the RNP, enabling productive docking of the substrate RNA into the enzymatic active site.

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Year:  2009        PMID: 19917616      PMCID: PMC2801282          DOI: 10.1074/jbc.R109.076893

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  46 in total

1.  Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 A resolution.

Authors:  Tomoko Hamma; Adrian R Ferré-D'Amaré
Journal:  Structure       Date:  2004-05       Impact factor: 5.006

2.  Crystal structure of the highly divergent pseudouridine synthase TruD reveals a circular permutation of a conserved fold.

Authors:  Charmaine Hoang; Adrian R Ferre-D'Amare
Journal:  RNA       Date:  2004-07       Impact factor: 4.942

3.  RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP.

Authors:  Daniel L Baker; Osama A Youssef; Michael I R Chastkofsky; David A Dy; Rebecca M Terns; Michael P Terns
Journal:  Genes Dev       Date:  2005-05-03       Impact factor: 11.361

4.  Precursor complex structure of pseudouridine synthase TruB suggests coupling of active site perturbations to an RNA-sequestering peripheral protein domain.

Authors:  Charmaine Hoang; Christopher S Hamilton; Eugene G Mueller; Adrian R Ferré-D'Amaré
Journal:  Protein Sci       Date:  2005-06-29       Impact factor: 6.725

5.  The RNA Modification Database: 1999 update.

Authors:  J Rozenski; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

6.  Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases.

Authors:  E V Koonin
Journal:  Nucleic Acids Res       Date:  1996-06-15       Impact factor: 16.971

7.  Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA.

Authors:  J Ni; A L Tien; M J Fournier
Journal:  Cell       Date:  1997-05-16       Impact factor: 41.582

Review 8.  The many facets of H/ACA ribonucleoproteins.

Authors:  U Thomas Meier
Journal:  Chromosoma       Date:  2005-03-16       Impact factor: 4.316

9.  Isolation and characterization of the small nucleolar ribonucleoprotein particle snR30 from Saccharomyces cerevisiae.

Authors:  B Lübben; P Fabrizio; B Kastner; R Lührmann
Journal:  J Biol Chem       Date:  1995-05-12       Impact factor: 5.157

10.  Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation.

Authors:  Bruno Charpentier; Sébastien Muller; Christiane Branlant
Journal:  Nucleic Acids Res       Date:  2005-06-02       Impact factor: 16.971

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  45 in total

Review 1.  Small RNAs with big implications: new insights into H/ACA snoRNA function and their role in human disease.

Authors:  Mary McMahon; Adrian Contreras; Davide Ruggero
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-10-31       Impact factor: 9.957

2.  An enhanced H/ACA RNP assembly mechanism for human telomerase RNA.

Authors:  Emily D Egan; Kathleen Collins
Journal:  Mol Cell Biol       Date:  2012-04-23       Impact factor: 4.272

3.  Specific RNA-protein interactions detected with saturation transfer difference NMR.

Authors:  Kimberly A Harris; Alexander Shekhtman; Paul F Agris
Journal:  RNA Biol       Date:  2013-07-30       Impact factor: 4.652

4.  Mechanism of the AAA+ ATPases pontin and reptin in the biogenesis of H/ACA RNPs.

Authors:  Rosario Machado-Pinilla; Dominique Liger; Nicolas Leulliot; U Thomas Meier
Journal:  RNA       Date:  2012-08-24       Impact factor: 4.942

5.  Protein synthesis: Stop the nonsense.

Authors:  Adrian R Ferré-D'Amaré
Journal:  Nature       Date:  2011-06-15       Impact factor: 49.962

Review 6.  Progress in structural studies of telomerase.

Authors:  Edward J Miracco; Jiansen Jiang; Darian D Cash; Juli Feigon
Journal:  Curr Opin Struct Biol       Date:  2014-02-04       Impact factor: 6.809

Review 7.  Telomeres in cancer: tumour suppression and genome instability.

Authors:  John Maciejowski; Titia de Lange
Journal:  Nat Rev Mol Cell Biol       Date:  2017-01-18       Impact factor: 94.444

Review 8.  Biology and clinical relevance of noncoding sno/scaRNAs.

Authors:  Thuy Cao; Sheeja Rajasingh; Saheli Samanta; Buddhadeb Dawn; Douglas C Bittel; Johnson Rajasingh
Journal:  Trends Cardiovasc Med       Date:  2017-08-12       Impact factor: 6.677

9.  Digital genome-wide ncRNA expression, including SnoRNAs, across 11 human tissues using polyA-neutral amplification.

Authors:  John C Castle; Christopher D Armour; Martin Löwer; David Haynor; Matthew Biery; Heather Bouzek; Ronghua Chen; Stuart Jackson; Jason M Johnson; Carol A Rohl; Christopher K Raymond
Journal:  PLoS One       Date:  2010-07-26       Impact factor: 3.240

10.  In human pseudouridine synthase 1 (hPus1), a C-terminal helical insert blocks tRNA from binding in the same orientation as in the Pus1 bacterial homologue TruA, consistent with their different target selectivities.

Authors:  Nadine Czudnochowski; Amy Liya Wang; Janet Finer-Moore; Robert M Stroud
Journal:  J Mol Biol       Date:  2013-05-23       Impact factor: 5.469

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