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Literature DB >> 19915012

Bioinformatic and systems biology tools to generate testable models of signaling pathways and their targets.

Andrea Pitzschke¹, Heribert Hirt.

Abstract

Entities: Chemical Disease Gene Species

Mesh：

Substances：

Year: 2009 PMID： 19915012 PMCID： PMC2815901 DOI： 10.1104/pp.109.149583

Source DB: PubMed Journal: Plant Physiol ISSN： 0032-0889 Impact factor: 8.340

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52 in total

1. Repression of shoot growth, a bZIP transcriptional activator, regulates cell elongation by controlling the level of gibberellins.

Authors: J Fukazawa; T Sakai; S Ishida; I Yamaguchi; Y Kamiya; Y Takahashi
Journal: Plant Cell Date: 2000-06 Impact factor: 11.277

2. AffyTrees: facilitating comparative analysis of Affymetrix plant microarray chips.

Authors: Tancred Frickey; Vagner Augusto Benedito; Michael Udvardi; Georg Weiller
Journal: Plant Physiol Date: 2007-12-07 Impact factor: 8.340

3. Downstream targets of WRKY33.

Authors: Klaus Petersen; Berthe Katrine Fiil; John Mundy; Morten Petersen
Journal: Plant Signal Behav Date: 2008-11

Review 4. MAPK cascade signalling networks in plant defence.

Authors: Andrea Pitzschke; Adam Schikora; Heribert Hirt
Journal: Curr Opin Plant Biol Date: 2009-07-14 Impact factor: 7.834

5. Sugar and hormone connections.

Authors: Patricia León; Jen Sheen
Journal: Trends Plant Sci Date: 2003-03 Impact factor: 18.313

6. Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response.

Authors: Inès M Brocard; Tim J Lynch; Ruth R Finkelstein
Journal: Plant Physiol Date: 2002-08 Impact factor: 8.340

7. Proteasome-mediated turnover of the transcription coactivator NPR1 plays dual roles in regulating plant immunity.

Authors: Steven H Spoel; Zhonglin Mou; Yasuomi Tada; Natalie W Spivey; Pascal Genschik; Xinnian Dong
Journal: Cell Date: 2009-05-29 Impact factor: 41.582

8. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function.

Authors: Ingo Ciolkowski; Dierk Wanke; Rainer P Birkenbihl; Imre E Somssich
Journal: Plant Mol Biol Date: 2008-06-04 Impact factor: 4.076

9. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.

Authors: Oliver Thimm; Oliver Bläsing; Yves Gibon; Axel Nagel; Svenja Meyer; Peter Krüger; Joachim Selbig; Lukas A Müller; Seung Y Rhee; Mark Stitt
Journal: Plant J Date: 2004-03 Impact factor: 6.417

7. Disruption of the ammonium transporter AMT1.1 alters basal defenses generating resistance against Pseudomonas syringae and Plectosphaerella cucumerina.

Authors: Victoria Pastor; Jordi Gamir; Gemma Camañes; Miguel Cerezo; Paloma Sánchez-Bel; Victor Flors
Journal: Front Plant Sci Date: 2014-05-30 Impact factor: 5.753

7 in total

Bioinformatic and systems biology tools to generate testable models of signaling pathways and their targets.

1. Repression of shoot growth, a bZIP transcriptional activator, regulates cell elongation by controlling the level of gibberellins.

2. AffyTrees: facilitating comparative analysis of Affymetrix plant microarray chips.

3. Downstream targets of WRKY33.

Review 4. MAPK cascade signalling networks in plant defence.

5. Sugar and hormone connections.

6. Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response.

7. Proteasome-mediated turnover of the transcription coactivator NPR1 plays dual roles in regulating plant immunity.

8. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function.

9. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.

10. Functional-genomics-based identification of genes that regulate Arabidopsis responses to multiple abiotic stresses.

Review 1. Coexpression landscape in ATTED-II: usage of gene list and gene network for various types of pathways.

2. Plant immunity: it's the hormones talking, but what do they say?

Review 3. Gene expression analysis, proteomics, and network discovery.

Review 4. Protein kinase signaling networks in plant innate immunity.

5. Metabolic module mining based on Independent Component Analysis in Arabidopsis thaliana.

6. Molecular signatures in Arabidopsis thaliana in response to insect attack and bacterial infection.

7. Disruption of the ammonium transporter AMT1.1 alters basal defenses generating resistance against Pseudomonas syringae and Plectosphaerella cucumerina.