Literature DB >> 19913537

A unifying view of 21st century systems biology.

Marc Vidal1.   

Abstract

The idea that multi-scale dynamic complex systems formed by interacting macromolecules and metabolites, cells, organs and organisms underlie some of the most fundamental aspects of life was proposed by a few visionaries half a century ago. We are witnessing a powerful resurgence of this idea made possible by the availability of nearly complete genome sequences, ever improving gene annotations and interactome network maps, the development of sophisticated informatic and imaging tools, and importantly, the use of engineering and physics concepts such as control and graph theory. Alongside four other fundamental "great ideas" as suggested by Sir Paul Nurse, namely, the gene, the cell, the role of chemistry in biological processes, and evolution by natural selection, systems-level understanding of "What is Life" may materialize as one of the major ideas of biology.

Mesh:

Year:  2009        PMID: 19913537     DOI: 10.1016/j.febslet.2009.11.024

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  41 in total

Review 1.  Network-based approaches in drug discovery and early development.

Authors:  J M Harrold; M Ramanathan; D E Mager
Journal:  Clin Pharmacol Ther       Date:  2013-09-11       Impact factor: 6.875

Review 2.  Targeting protein-protein interfaces using macrocyclic peptides.

Authors:  Meng Gao; Kui Cheng; Hang Yin
Journal:  Biopolymers       Date:  2015-07       Impact factor: 2.505

3.  From DNA binding to metabolic control: integration of -omics data reveals drug targets for prostate cancer.

Authors:  Hui Gao; Karin Dahlman-Wright
Journal:  EMBO J       Date:  2011-07-06       Impact factor: 11.598

Review 4.  Interactome networks and human disease.

Authors:  Marc Vidal; Michael E Cusick; Albert-László Barabási
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

Review 5.  Organogenesis from stem cells in planta: multiple feedback loops integrating molecular and mechanical signals.

Authors:  Fabrice Besnard; Teva Vernoux; Olivier Hamant
Journal:  Cell Mol Life Sci       Date:  2011-06-08       Impact factor: 9.261

6.  A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice.

Authors:  Shayne D Wierbowski; Tommy V Vo; Pascal Falter-Braun; Timothy O Jobe; Lars H Kruse; Xiaomu Wei; Jin Liang; Michael J Meyer; Nurten Akturk; Christen A Rivera-Erick; Nicolas A Cordero; Mauricio I Paramo; Elnur E Shayhidin; Marta Bertolotti; Nathaniel D Tippens; Kazi Akther; Rita Sharma; Yuichi Katayose; Kourosh Salehi-Ashtiani; Tong Hao; Pamela C Ronald; Joseph R Ecker; Peter A Schweitzer; Shoshi Kikuchi; Hiroshi Mizuno; David E Hill; Marc Vidal; Gaurav D Moghe; Susan R McCouch; Haiyuan Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-12       Impact factor: 11.205

7.  Prognostic gene expression signatures of breast cancer are lacking a sensible biological meaning.

Authors:  Kalifa Manjang; Shailesh Tripathi; Olli Yli-Harja; Matthias Dehmer; Galina Glazko; Frank Emmert-Streib
Journal:  Sci Rep       Date:  2021-01-08       Impact factor: 4.379

8.  Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods.

Authors:  Luis P Fernandes; Alessia Annibale; Jens Kleinjung; Anthony C C Coolen; Franca Fraternali
Journal:  PLoS One       Date:  2010-08-18       Impact factor: 3.240

9.  A curated online resource for SOX10 and pigment cell molecular genetic pathways.

Authors:  Laura L Baxter; R Travis Moreland; Anh-Dao Nguyen; Tyra G Wolfsberg; William J Pavan
Journal:  Database (Oxford)       Date:  2010-10-25       Impact factor: 3.451

10.  Inferring the conservative causal core of gene regulatory networks.

Authors:  Gökmen Altay; Frank Emmert-Streib
Journal:  BMC Syst Biol       Date:  2010-09-28
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