Literature DB >> 19913018

Systems biology: the elements and principles of life.

Hans V Westerhoff1, Catherine Winder, Hanan Messiha, Evangelos Simeonidis, Malgorzata Adamczyk, Malkhey Verma, Frank J Bruggeman, Warwick Dunn.   

Abstract

Systems Biology has a mission that puts it at odds with traditional paradigms of physics and molecular biology, such as the simplicity requested by Occam's razor and minimum energy/maximal efficiency. By referring to biochemical experiments on control and regulation, and on flux balancing in yeast, we show that these paradigms are inapt. Systems Biology does not quite converge with biology either: Although it certainly requires accurate 'stamp collecting', it discovers quantitative laws. Systems Biology is a science of its own, discovering own fundamental principles, some of which we identify here.

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Year:  2009        PMID: 19913018     DOI: 10.1016/j.febslet.2009.11.018

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  29 in total

1.  What it takes to understand and cure a living system: computational systems biology and a systems biology-driven pharmacokinetics-pharmacodynamics platform.

Authors:  Maciej Swat; Szymon M Kiełbasa; Sebastian Polak; Brett Olivier; Frank J Bruggeman; Mark Quinton Tulloch; Jacky L Snoep; Arthur J Verhoeven; Hans V Westerhoff
Journal:  Interface Focus       Date:  2010-12-08       Impact factor: 3.906

2.  Systems biology: Hypothesis-driven omics integration.

Authors:  Andreas Schmid; Lars M Blank
Journal:  Nat Chem Biol       Date:  2010-07       Impact factor: 15.040

3.  Microbial catabolic activities are naturally selected by metabolic energy harvest rate.

Authors:  Rebeca González-Cabaleiro; Irina D Ofiţeru; Juan M Lema; Jorge Rodríguez
Journal:  ISME J       Date:  2015-07-10       Impact factor: 10.302

Review 4.  Systems biology for molecular life sciences and its impact in biomedicine.

Authors:  Miguel Ángel Medina
Journal:  Cell Mol Life Sci       Date:  2012-08-19       Impact factor: 9.261

Review 5.  Systems biology perspectives on minimal and simpler cells.

Authors:  Joana C Xavier; Kiran Raosaheb Patil; Isabel Rocha
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

6.  Short-Term Transcriptional Response of Microbial Communities to Nitrogen Fertilization in a Pine Forest Soil.

Authors:  Michaeline B N Albright; Renee Johansen; Deanna Lopez; La Verne Gallegos-Graves; Blaire Steven; Cheryl R Kuske; John Dunbar
Journal:  Appl Environ Microbiol       Date:  2018-07-17       Impact factor: 4.792

7.  Metabolic control analysis of cellular respiration in situ in intraoperational samples of human breast cancer.

Authors:  Tuuli Kaambre; Vladimir Chekulayev; Igor Shevchuk; Minna Karu-Varikmaa; Natalja Timohhina; Kersti Tepp; Jelena Bogovskaja; Riina Kütner; Vahur Valvere; Valdur Saks
Journal:  J Bioenerg Biomembr       Date:  2012-07-27       Impact factor: 2.945

8.  Understanding complexity in neurodegenerative diseases: in silico reconstruction of emergence.

Authors:  Alexey Kolodkin; Evangelos Simeonidis; Rudi Balling; Hans V Westerhoff
Journal:  Front Physiol       Date:  2012-07-23       Impact factor: 4.566

9.  Nutrient control of eukaryote cell growth: a systems biology study in yeast.

Authors:  Alex Gutteridge; Pinar Pir; Juan I Castrillo; Philip D Charles; Kathryn S Lilley; Stephen G Oliver
Journal:  BMC Biol       Date:  2010-05-24       Impact factor: 7.431

Review 10.  Nitrogen assimilation in Escherichia coli: putting molecular data into a systems perspective.

Authors:  Wally C van Heeswijk; Hans V Westerhoff; Fred C Boogerd
Journal:  Microbiol Mol Biol Rev       Date:  2013-12       Impact factor: 11.056

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