Literature DB >> 19907434

The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics.

Tracy A Brooks1, Laurence H Hurley.   

Abstract

MYC is deregulated in most tumour types, but an effective means to selectively target its aberrant expression is not yet available. Supercoiling that is induced by transcription has been demonstrated to have dynamic effects on DNA in the MYC promoter element: it converts duplex DNA to non-duplex DNA structures, even at considerable distances from the transcriptional start site. These non-duplex DNA structures, which control both turning on and off of transcription and the rate of transcription firing, are amenable to small-molecule targeting. This dynamic system provides a unique opportunity for the treatment of tumours in which MYC is an important oncogene.

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Year:  2009        PMID: 19907434     DOI: 10.1038/nrc2733

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  132 in total

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Authors:  A S Krasilnikov; A Podtelezhnikov; A Vologodskii; S M Mirkin
Journal:  J Mol Biol       Date:  1999-10-08       Impact factor: 5.469

2.  A far upstream element stimulates c-myc expression in undifferentiated leukemia cells.

Authors:  M I Avigan; B Strober; D Levens
Journal:  J Biol Chem       Date:  1990-10-25       Impact factor: 5.157

3.  Rapid spontaneous accessibility of nucleosomal DNA.

Authors:  Gu Li; Marcia Levitus; Carlos Bustamante; Jonathan Widom
Journal:  Nat Struct Mol Biol       Date:  2004-12-05       Impact factor: 15.369

Review 4.  Mechanisms of transcriptional repression by Myc.

Authors:  D Kleine-Kohlbrecher; S Adhikary; M Eilers
Journal:  Curr Top Microbiol Immunol       Date:  2006       Impact factor: 4.291

5.  DNA torsional stress propagates through chromatin fiber and participates in transcriptional regulation.

Authors:  Christophe Lavelle
Journal:  Nat Struct Mol Biol       Date:  2008-02       Impact factor: 15.369

6.  Abnormal expression of apoptosis-related genes in haematological malignancies: overexpression of MYC is poor prognostic sign in mantle cell lymphoma.

Authors:  Bálint Nagy; Tuija Lundán; Marcelo L Larramendy; Yan Aalto; Ying Zhu; Tarja Niini; Henrik Edgren; Anna Ferrer; Juhani Vilpo; Erkki Elonen; Kim Vettenranta; Kaarle Franssila; Sakari Knuutila
Journal:  Br J Haematol       Date:  2003-02       Impact factor: 6.998

Review 7.  Apoptotic signaling by c-MYC.

Authors:  B Hoffman; D A Liebermann
Journal:  Oncogene       Date:  2008-10-27       Impact factor: 9.867

8.  Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells.

Authors:  Anjali Verma; Vinod Kumar Yadav; Richa Basundra; Akinchan Kumar; Shantanu Chowdhury
Journal:  Nucleic Acids Res       Date:  2009-02-11       Impact factor: 16.971

Review 9.  The c-myc promoter: still MysterY and challenge.

Authors:  Inken Wierstra; Jürgen Alves
Journal:  Adv Cancer Res       Date:  2008       Impact factor: 6.242

10.  A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells.

Authors:  Zirong Li; Sara Van Calcar; Chunxu Qu; Webster K Cavenee; Michael Q Zhang; Bing Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-13       Impact factor: 11.205

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  104 in total

1.  The KRAS promoter responds to Myc-associated zinc finger and poly(ADP-ribose) polymerase 1 proteins, which recognize a critical quadruplex-forming GA-element.

Authors:  Susanna Cogoi; Manikandan Paramasivam; Alexandro Membrino; Kazunari K Yokoyama; Luigi E Xodo
Journal:  J Biol Chem       Date:  2010-05-10       Impact factor: 5.157

2.  Solution structure of a 2:1 quindoline-c-MYC G-quadruplex: insights into G-quadruplex-interactive small molecule drug design.

Authors:  Jixun Dai; Megan Carver; Laurence H Hurley; Danzhou Yang
Journal:  J Am Chem Soc       Date:  2011-10-14       Impact factor: 15.419

3.  Demonstration that drug-targeted down-regulation of MYC in non-Hodgkins lymphoma is directly mediated through the promoter G-quadruplex.

Authors:  Robert V Brown; Forest L Danford; Vijay Gokhale; Laurence H Hurley; Tracy A Brooks
Journal:  J Biol Chem       Date:  2011-09-28       Impact factor: 5.157

4.  Molecular cloning of the human platelet-derived growth factor receptor beta (PDGFR-beta) promoter and drug targeting of the G-quadruplex-forming region to repress PDGFR-beta expression.

Authors:  Yong Qin; Jessica S Fortin; Denise Tye; Mary Gleason-Guzman; Tracy A Brooks; Laurence H Hurley
Journal:  Biochemistry       Date:  2010-05-18       Impact factor: 3.162

5.  Resolving the Ligand-Binding Specificity in c-MYC G-Quadruplex DNA: Absolute Binding Free Energy Calculations and SPR Experiment.

Authors:  Nanjie Deng; Lauren Wickstrom; Piotr Cieplak; Clement Lin; Danzhou Yang
Journal:  J Phys Chem B       Date:  2017-11-09       Impact factor: 2.991

Review 6.  New Insights into the Functions of Nucleic Acids Controlled by Cellular Microenvironments.

Authors:  Saki Matsumoto; Naoki Sugimoto
Journal:  Top Curr Chem (Cham)       Date:  2021-03-30

Review 7.  Controlling gene expression by DNA mechanics: emerging insights and challenges.

Authors:  David Levens; Laura Baranello; Fedor Kouzine
Journal:  Biophys Rev       Date:  2016-11-14

Review 8.  Controlling gene expression by DNA mechanics: emerging insights and challenges.

Authors:  David Levens; Laura Baranello; Fedor Kouzine
Journal:  Biophys Rev       Date:  2016-08-20

9.  DNA damage and genome instability by G-quadruplex ligands are mediated by R loops in human cancer cells.

Authors:  Alessio De Magis; Stefano G Manzo; Marco Russo; Jessica Marinello; Rita Morigi; Olivier Sordet; Giovanni Capranico
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-27       Impact factor: 11.205

10.  "One ring to bind them all"-part I: the efficiency of the macrocyclic scaffold for g-quadruplex DNA recognition.

Authors:  David Monchaud; Anton Granzhan; Nicolas Saettel; Aurore Guédin; Jean-Louis Mergny; Marie-Paule Teulade-Fichou
Journal:  J Nucleic Acids       Date:  2010-05-24
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