Literature DB >> 19897613

Alishewanella agri sp. nov., isolated from landfill soil.

Min-Soo Kim1, Seon Kyung Jo, Seong Woon Roh, Jin-Woo Bae.   

Abstract

Strain BL06(T) was isolated from landfill soil in Pohang, Korea. Strain BL06(T) is Gram-negative, aerobic, non-motile and rod-shaped. For growth, the NaCl range is 0-6 % (w/v), the temperature range is 10-44 degrees C and the pH range is 5.5-12.0. Based on the 16S rRNA gene and gyrase B (gyrB) gene sequences, phylogenetic analysis showed that strain BL06(T) is associated with the genus Alishewanella and related closely to the type strains of Alishewanella species (98.8 % 16S rRNA gene sequence similarity to Alishewanella aestuarii, 98.7 % to Alishewanella fetalis and 98.5 % to Alishewanella jeotgali). Physiological and biochemical tests verified that strain BL06(T) is genotypically and phenotypically different from previously described species in the genus Alishewanella. DNA-DNA hybridization experiments showed that relatedness between the genomic DNA of strain BL06(T) and type strains of other Alishewanella species is <41 %. These findings suggest strongly that the strain represents a novel species, despite high 16S rRNA gene sequence similarity between strain BL06(T) and related strains. Therefore, strain BL06(T) (=KCTC 22400(T)=JCM 15597(T)) is proposed to represent a novel species in the genus Alishewanella, named Alishewanella agri sp. nov.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19897613     DOI: 10.1099/ijs.0.011684-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  10 in total

1.  Comparative genomic and transcriptomic analyses reveal habitat differentiation and different transcriptional responses during pectin metabolism in Alishewanella species.

Authors:  Jaejoon Jung; Woojun Park
Journal:  Appl Environ Microbiol       Date:  2013-08-09       Impact factor: 4.792

2.  Genome sequence of pectin-degrading Alishewanella agri, isolated from landfill soil.

Authors:  Jisun Kim; Jaejoon Jung; Jung-Suk Sung; Jongsik Chun; Woojun Park
Journal:  J Bacteriol       Date:  2012-09       Impact factor: 3.490

3.  Genome sequence of extracellular-protease-producing Alishewanella jeotgali isolated from traditional Korean fermented seafood.

Authors:  Jaejoon Jung; Jongsik Chun; Woojun Park
Journal:  J Bacteriol       Date:  2012-04       Impact factor: 3.490

4.  The enrichment of an alkaliphilic biofilm consortia capable of the anaerobic degradation of isosaccharinic acid from cellulosic materials incubated within an anthropogenic, hyperalkaline environment.

Authors:  C J Charles; S P Rout; E J Garratt; K Patel; A P Laws; P N Humphreys
Journal:  FEMS Microbiol Ecol       Date:  2015-07-20       Impact factor: 4.194

5.  Genome sequence of pectin-degrading Alishewanella aestuarii strain B11(T), isolated from tidal flat sediment.

Authors:  Jaejoon Jung; Sungjong Choi; Jongsik Chun; Woojun Park
Journal:  J Bacteriol       Date:  2012-10       Impact factor: 3.490

6.  Alishewanella solinquinati sp. nov., isolated from soil contaminated with textile dyes.

Authors:  Yogesh M Kolekar; Shrikant P Pawar; Sunil S Adav; Liu-Qiang Zheng; Wen-Jun Li; Yogesh S Shouche; Syed G Dastager; Kisan M Kodam
Journal:  Curr Microbiol       Date:  2013-05-21       Impact factor: 2.188

7.  Draft Whole-Genome Sequence of the Alkaliphilic Alishewanella aestuarii Strain HH-ZS, Isolated from Historical Lime Kiln Waste-Contaminated Soil.

Authors:  Zohier B Salah; Simon P Rout; Paul N Humphreys
Journal:  Genome Announc       Date:  2016-12-29

8.  Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination.

Authors:  Xian Xia; Jiahong Li; Shuijiao Liao; Gaoting Zhou; Hui Wang; Liqiong Li; Biao Xu; Gejiao Wang
Journal:  Stand Genomic Sci       Date:  2016-08-05

9.  A comparative analysis of drinking water employing metagenomics.

Authors:  Kyle D Brumfield; Nur A Hasan; Menu B Leddy; Joseph A Cotruvo; Shah M Rashed; Rita R Colwell; Anwar Huq
Journal:  PLoS One       Date:  2020-04-09       Impact factor: 3.240

10.  Application of ion torrent sequencing to the assessment of the effect of alkali ballast water treatment on microbial community diversity.

Authors:  Masanori Fujimoto; Gregory A Moyerbrailean; Sifat Noman; Jason P Gizicki; Michal L Ram; Phyllis A Green; Jeffrey L Ram
Journal:  PLoS One       Date:  2014-09-15       Impact factor: 3.240

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.