Literature DB >> 19897353

Syntrophy in anaerobic global carbon cycles.

Michael J McInerney1, Jessica R Sieber, Robert P Gunsalus.   

Abstract

Syntrophy is an essential intermediary step in the anaerobic conversion of organic matter to methane where metabolically distinct microorganisms are tightly linked by the need to maintain the exchanged metabolites at very low concentrations. Anaerobic syntrophy is thermodynamically constrained, and is probably a prime reason why it is difficult to culture microbes as these approaches disrupt consortia. Reconstruction of artificial syntrophic consortia has allowed uncultured syntrophic metabolizers and methanogens to be optimally grown and studied biochemically. The pathways for syntrophic acetate, propionate and longer chain fatty acid metabolism are mostly understood, but key steps involved in benzoate breakdown and cyclohexane carboxylate formation are unclear. Syntrophic metabolism requires reverse electron transfer, close physical contact, and metabolic synchronization of the syntrophic partners. Genomic analyses reveal that multiple mechanisms exist for reverse electron transfer. Surprisingly, the flagellum functions were implicated in ensuring close physical proximity and synchronization of the syntrophic partners.

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Year:  2009        PMID: 19897353      PMCID: PMC2790021          DOI: 10.1016/j.copbio.2009.10.001

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  55 in total

1.  Effect of dilution rate on the microbial structure of a mesophilic butyrate-degrading methanogenic community during continuous cultivation.

Authors:  Yue-Qin Tang; Toru Shigematsu; Shigeru Morimura; Kenji Kida
Journal:  Appl Microbiol Biotechnol       Date:  2007-01-13       Impact factor: 4.813

Review 2.  Electron transfer in syntrophic communities of anaerobic bacteria and archaea.

Authors:  Alfons J M Stams; Caroline M Plugge
Journal:  Nat Rev Microbiol       Date:  2009-08       Impact factor: 60.633

3.  Energetics of syntrophic propionate oxidation in defined batch and chemostat cocultures.

Authors:  J C Scholten; R Conrad
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

4.  Identification and cultivation of anaerobic, syntrophic long-chain fatty acid-degrading microbes from mesophilic and thermophilic methanogenic sludges.

Authors:  Masashi Hatamoto; Hiroyuki Imachi; Akiyoshi Ohashi; Hideki Harada
Journal:  Appl Environ Microbiol       Date:  2006-12-22       Impact factor: 4.792

5.  Cyclohexa-1,5-diene-1-carbonyl-coenzyme A (CoA) hydratases of Geobacter metallireducens and Syntrophus aciditrophicus: Evidence for a common benzoyl-CoA degradation pathway in facultative and strict anaerobes.

Authors:  Franziska Peters; Yoshifumi Shinoda; Michael J McInerney; Matthias Boll
Journal:  J Bacteriol       Date:  2006-11-22       Impact factor: 3.490

6.  Diversity of anaerobic microorganisms involved in long-chain fatty acid degradation in methanogenic sludges as revealed by RNA-based stable isotope probing.

Authors:  Masashi Hatamoto; Hiroyuki Imachi; Yuto Yashiro; Akiyoshi Ohashi; Hideki Harada
Journal:  Appl Environ Microbiol       Date:  2007-05-04       Impact factor: 4.792

7.  Crude-oil biodegradation via methanogenesis in subsurface petroleum reservoirs.

Authors:  D M Jones; I M Head; N D Gray; J J Adams; A K Rowan; C M Aitken; B Bennett; H Huang; A Brown; B F J Bowler; T Oldenburg; M Erdmann; S R Larter
Journal:  Nature       Date:  2007-12-12       Impact factor: 49.962

8.  Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil.

Authors:  Tillmann Lueders; Bianca Pommerenke; Michael W Friedrich
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

9.  The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth.

Authors:  Michael J McInerney; Lars Rohlin; Housna Mouttaki; UnMi Kim; Rebecca S Krupp; Luis Rios-Hernandez; Jessica Sieber; Christopher G Struchtemeyer; Anamitra Bhattacharyya; John W Campbell; Robert P Gunsalus
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-18       Impact factor: 11.205

10.  6-Oxocyclohex-1-ene-1-carbonyl-coenzyme A hydrolases from obligately anaerobic bacteria: characterization and identification of its gene as a functional marker for aromatic compounds degrading anaerobes.

Authors:  Kevin Kuntze; Yoshifumi Shinoda; Housna Moutakki; Michael J McInerney; Carsten Vogt; Hans-Hermann Richnow; Matthias Boll
Journal:  Environ Microbiol       Date:  2008-02-28       Impact factor: 5.491

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  104 in total

1.  Subpopulation-specific metabolic pathway usage in mixed cultures as revealed by reporter protein-based 13C analysis.

Authors:  Martin Rühl; Wolf-Dietrich Hardt; Uwe Sauer
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

2.  Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates.

Authors:  Elin E Lilja; David R Johnson
Journal:  ISME J       Date:  2016-01-15       Impact factor: 10.302

3.  Tungsten and molybdenum regulation of formate dehydrogenase expression in Desulfovibrio vulgaris Hildenborough.

Authors:  Sofia M da Silva; Catarina Pimentel; Filipa M A Valente; Claudina Rodrigues-Pousada; Inês A C Pereira
Journal:  J Bacteriol       Date:  2011-04-15       Impact factor: 3.490

Review 4.  Rethinking glycolysis: on the biochemical logic of metabolic pathways.

Authors:  Arren Bar-Even; Avi Flamholz; Elad Noor; Ron Milo
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

5.  Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity.

Authors:  Hans C Bernstein; Steven D Paulson; Ross P Carlson
Journal:  J Biotechnol       Date:  2011-10-12       Impact factor: 3.307

6.  Bacterial community structures are unique and resilient in full-scale bioenergy systems.

Authors:  Jeffrey J Werner; Dan Knights; Marcelo L Garcia; Nicholas B Scalfone; Samual Smith; Kevin Yarasheski; Theresa A Cummings; Allen R Beers; Rob Knight; Largus T Angenent
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-22       Impact factor: 11.205

7.  Increase of methane formation by ethanol addition during continuous fermentation of biogas sludge.

Authors:  Sarah Refai; Kati Wassmann; Sebastian van Helmont; Stefanie Berger; Uwe Deppenmeier
Journal:  J Ind Microbiol Biotechnol       Date:  2014-10-25       Impact factor: 3.346

8.  Synthetic microbial consortia for biosynthesis and biodegradation: promises and challenges.

Authors:  Shun Che; Yujie Men
Journal:  J Ind Microbiol Biotechnol       Date:  2019-07-05       Impact factor: 3.346

9.  Orenia metallireducens sp. nov. Strain Z6, a Novel Metal-Reducing Member of the Phylum Firmicutes from the Deep Subsurface.

Authors:  Yiran Dong; Robert A Sanford; Maxim I Boyanov; Kenneth M Kemner; Theodore M Flynn; Edward J O'Loughlin; Yun-Juan Chang; Randall A Locke; Joseph R Weber; Sheila M Egan; Roderick I Mackie; Isaac Cann; Bruce W Fouke
Journal:  Appl Environ Microbiol       Date:  2016-10-14       Impact factor: 4.792

Review 10.  Distribution of CO(2) fixation and acetate mineralization pathways in microorganisms from extremophilic anaerobic biotopes.

Authors:  Lilia Montoya; Lourdes B Celis; Elías Razo-Flores; Angel G Alpuche-Solís
Journal:  Extremophiles       Date:  2012-10-12       Impact factor: 2.395

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