Literature DB >> 19897087

Correlation analysis a tool for comparing relaxation-type models to experimental data.

Maurizio Tomaiuolo1, Joel Tabak1, Richard Bertram2.   

Abstract

We describe a new technique for comparing mathematical models to the biological systems that are described. This technique is appropriate for systems that produce relaxation oscillations or bursting oscillations, and takes advantage of noise that is inherent to all biological systems. Both types of oscillations are composed of active phases of activity followed by silent phases, repeating periodically. The presence of noise adds variability to the durations of the different phases. The central idea of the technique is that the active phase duration may be correlated with either/both the previous or next silent phase duration, and the resulting correlation pattern provides information about the dynamic structure of the system. Correlation patterns can easily be determined by making scatter plots and applying correlation analysis to the cluster of data points. This could be done both with experimental data and with model simulation data. If the model correlation pattern is in general agreement with the experimental data, then this adds support for the validity of the model. Otherwise, the model must be corrected. While this tool is only one test of many required to validate a mathematical model, it is easy to implement and is noninvasive.

Entities:  

Mesh:

Year:  2009        PMID: 19897087      PMCID: PMC3152295          DOI: 10.1016/S0076-6879(09)67001-4

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  29 in total

1.  The role of activity-dependent network depression in the expression and self-regulation of spontaneous activity in the developing spinal cord.

Authors:  J Tabak; J Rinzel; M J O'Donovan
Journal:  J Neurosci       Date:  2001-11-15       Impact factor: 6.167

Review 2.  Resonate-and-fire neurons.

Authors:  E M Izhikevich
Journal:  Neural Netw       Date:  2001 Jul-Sep

3.  Asymptotic analysis of noise sensitivity in a neuronal burster.

Authors:  R Kuske; S M Baer
Journal:  Bull Math Biol       Date:  2002-05       Impact factor: 1.758

Review 4.  Modeling neural oscillations.

Authors:  G Bard Ermentrout; Carson C Chow
Journal:  Physiol Behav       Date:  2002-12

5.  Mechanism for the universal pattern of activity in developing neuronal networks.

Authors:  Joël Tabak; Michael Mascagni; Richard Bertram
Journal:  J Neurophysiol       Date:  2010-02-17       Impact factor: 2.714

6.  Dissipative structures for an allosteric model. Application to glycolytic oscillations.

Authors:  A Goldbeter; R Lefever
Journal:  Biophys J       Date:  1972-10       Impact factor: 4.033

7.  What is a biological oscillator?

Authors:  W O Friesen; G D Block
Journal:  Am J Physiol       Date:  1984-06

8.  Minimal model for intracellular calcium oscillations and electrical bursting in melanotrope cells of Xenopus laevis.

Authors:  L N Cornelisse; W J Scheenen; W J Koopman; E W Roubos; S C Gielen
Journal:  Neural Comput       Date:  2001-01       Impact factor: 2.026

9.  Glucose-induced electrical activity in pancreatic islet cells.

Authors:  P M Dean; E K Matthews
Journal:  J Physiol       Date:  1970-09       Impact factor: 5.182

10.  Minimal model for membrane oscillations in the pancreatic beta-cell.

Authors:  T R Chay; J Keizer
Journal:  Biophys J       Date:  1983-05       Impact factor: 4.033

View more
  1 in total

1.  Two types of burst firing in gonadotrophin-releasing hormone neurones.

Authors:  Z Chu; M Tomaiuolo; R Bertram; S M Moenter
Journal:  J Neuroendocrinol       Date:  2012-07       Impact factor: 3.627

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.