Literature DB >> 19888901

GRIP: a server for predicting interfaces for GPCR oligomerization.

Wataru Nemoto1, Kazuhiko Fukui, Hiroyuki Toh.   

Abstract

G-Protein Coupled Receptors (GPCRs) are one of the most important pharmaceutical targets. Recent studies have revealed that many GPCRs form homo- and/or hetero-oligomers. The molecular mechanisms of oligomerization are not fully understood yet, due to the lack of structural data for GPCR complexes. Therefore, accurate interface prediction would accelerate investigations of the molecular mechanisms of oligomerization and signaling via GPCRs. However, interface prediction for GPCR oligomerization is difficult, because the various GPCR subtypes often use different structural regions as their interfaces, even when the subtypes belong to the same subfamily. Previously, we developed a method to predict the interfaces for GPCR oligomerization, which overcomes the difficulty described above. We have now launched a web service, named G-protein coupled Receptors Interaction Partners (GRIP) ( http://grip.cbrc.jp/GRIP/index.html ), to predict the interfaces for GPCR oligomerization. As far as we know, it is the only service to predict the interfaces for GPCR oligomerization.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19888901     DOI: 10.3109/10799890903295143

Source DB:  PubMed          Journal:  J Recept Signal Transduct Res        ISSN: 1079-9893            Impact factor:   2.092


  5 in total

1.  GPCR-OKB: the G Protein Coupled Receptor Oligomer Knowledge Base.

Authors:  George Khelashvili; Kevin Dorff; Jufang Shan; Marta Camacho-Artacho; Lucy Skrabanek; Bas Vroling; Michel Bouvier; Lakshmi A Devi; Susan R George; Jonathan A Javitch; Martin J Lohse; Graeme Milligan; Richard R Neubig; Krzysztof Palczewski; Marc Parmentier; Jean-Philippe Pin; Gerrit Vriend; Fabien Campagne; Marta Filizola
Journal:  Bioinformatics       Date:  2010-05-25       Impact factor: 6.937

2.  Guardians of the Cell: State-of-the-Art of Membrane Proteins from a Computational Point-of-View.

Authors:  Nícia Rosário-Ferreira; Catarina Marques-Pereira; Raquel P Gouveia; Joana Mourão; Irina S Moreira
Journal:  Methods Mol Biol       Date:  2021

3.  Interface Prediction for GPCR Oligomerization Between Transmembrane Helices.

Authors:  Wataru Nemoto; Akira Saito
Journal:  Methods Mol Biol       Date:  2021

4.  DOR - a Database of Olfactory Receptors - Integrated Repository for Sequence and Secondary Structural Information of Olfactory Receptors in Selected Eukaryotic Genomes.

Authors:  Balasubramanian Nagarathnam; Snehal D Karpe; Krishnan Harini; Kannan Sankar; Mohammed Iftekhar; Durairaj Rajesh; Sadasivam Giji; Govidaraju Archunan; Veluchamy Balakrishnan; M Michael Gromiha; Wataru Nemoto; Kazhuhiko Fukui; Ramanathan Sowdhamini
Journal:  Bioinform Biol Insights       Date:  2014-06-12

Review 5.  The five dimensions of receptor pharmacology exemplified by melatonin receptors: An opinion.

Authors:  Jean A Boutin; Céline Legros
Journal:  Pharmacol Res Perspect       Date:  2019-12-29
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.