Literature DB >> 19880312

Archaeal RNA polymerase.

Akira Hirata1, Katsuhiko S Murakami.   

Abstract

The recently solved X-ray crystal structures of archaeal RNA polymerase (RNAP) allow a structural comparison of the transcription machinery among all three domains of life. Archaeal transcription is very simple and all components, including the structures of general transcription factors and RNAP, are highly conserved in eukaryotes. Therefore, it could be a new model for the dissection of the eukaryotic transcription apparatus. The archaeal RNAP structure also provides a framework for addressing the functional role that Fe-S clusters play within the transcription machinery of archaea and eukaryotes. A comparison between bacterial and archaeal open complex models reveals likely key motifs of archaeal RNAP for DNA unwinding during the open complex formation.

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Year:  2009        PMID: 19880312      PMCID: PMC2806685          DOI: 10.1016/j.sbi.2009.10.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  51 in total

1.  Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

Authors:  G Zhang; E A Campbell; L Minakhin; C Richter; K Severinov; S A Darst
Journal:  Cell       Date:  1999-09-17       Impact factor: 41.582

Review 2.  Bacterial RNA polymerases: the wholo story.

Authors:  Katsuhiko S Murakami; Seth A Darst
Journal:  Curr Opin Struct Biol       Date:  2003-02       Impact factor: 6.809

Review 3.  Archaeal transcription and its regulators.

Authors:  E Peter Geiduschek; Mohamed Ouhammouch
Journal:  Mol Microbiol       Date:  2005-06       Impact factor: 3.501

4.  TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro.

Authors:  Thomas J Santangelo; L'ubomíra Cubonová; Cindy L James; John N Reeve
Journal:  J Mol Biol       Date:  2006-12-30       Impact factor: 5.469

5.  Transcription factor E is a part of transcription elongation complexes.

Authors:  Sebastian Grünberg; Michael S Bartlett; Souad Naji; Michael Thomm
Journal:  J Biol Chem       Date:  2007-10-05       Impact factor: 5.157

6.  Temperature, template topology, and factor requirements of archaeal transcription.

Authors:  S D Bell; C Jaxel; M Nadal; P F Kosa; S P Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-22       Impact factor: 11.205

7.  Recombinant RNA polymerase: inducible overexpression, purification and assembly of Escherichia coli rpo gene products.

Authors:  K Zalenskaya; J Lee; C N Gujuluva; Y K Shin; M Slutsky; A Goldfarb
Journal:  Gene       Date:  1990-04-30       Impact factor: 3.688

8.  Bridge helix and trigger loop perturbations generate superactive RNA polymerases.

Authors:  Lin Tan; Simone Wiesler; Dominika Trzaska; Hannah C Carney; Robert O J Weinzierl
Journal:  J Biol       Date:  2008-12-02

9.  Archaebacteria and eukaryotes possess DNA-dependent RNA polymerases of a common type.

Authors:  J Huet; R Schnabel; A Sentenac; W Zillig
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

10.  The archaeal RNA polymerase subunit P and the eukaryotic polymerase subunit Rpb12 are interchangeable in vivo and in vitro.

Authors:  Christoph Reich; Mirijam Zeller; Philipp Milkereit; Winfried Hausner; Patrick Cramer; Herbert Tschochner; Michael Thomm
Journal:  Mol Microbiol       Date:  2008-12-18       Impact factor: 3.501

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  22 in total

1.  A small post-translocation energy bias aids nucleotide selection in T7 RNA polymerase transcription.

Authors:  Jin Yu; George Oster
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

2.  Deletion of switch 3 results in an archaeal RNA polymerase that is defective in transcript elongation.

Authors:  Thomas J Santangelo; John N Reeve
Journal:  J Biol Chem       Date:  2010-05-28       Impact factor: 5.157

3.  RNA polymerase and transcription elongation factor Spt4/5 complex structure.

Authors:  Brianna J Klein; Daniel Bose; Kevin J Baker; Zahirah M Yusoff; Xiaodong Zhang; Katsuhiko S Murakami
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

4.  Manipulating archaeal systems to permit analyses of transcription elongation-termination decisions in vitro.

Authors:  Alexandra M Gehring; Thomas J Santangelo
Journal:  Methods Mol Biol       Date:  2015

5.  Metalloproteins and the pyrite-based origin of life: a critical assessment.

Authors:  Mario Rivas; Arturo Becerra; Juli Peretó; Jeffrey L Bada; Antonio Lazcano
Journal:  Orig Life Evol Biosph       Date:  2011-03-24       Impact factor: 1.950

6.  Archaeal RNA polymerase arrests transcription at DNA lesions.

Authors:  Alexandra M Gehring; Thomas J Santangelo
Journal:  Transcription       Date:  2017-06-09

7.  Possible interaction between the bacterial transcription factor ArtA and the eukaryotic RNA polymerase III promoter.

Authors:  Sachiko Matsutani
Journal:  Genetica       Date:  2016-05-13       Impact factor: 1.082

8.  Archaeal transcription.

Authors:  Breanna R Wenck; Thomas J Santangelo
Journal:  Transcription       Date:  2020-10-28

Review 9.  Fluorescent methods to study transcription initiation and transition into elongation.

Authors:  Aishwarya P Deshpande; Shemaila Sultana; Smita S Patel
Journal:  Exp Suppl       Date:  2014

Review 10.  Basic mechanism of transcription by RNA polymerase II.

Authors:  Vladimir Svetlov; Evgeny Nudler
Journal:  Biochim Biophys Acta       Date:  2012-09-06
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