Literature DB >> 19878679

Coordination of gene expression with growth rate: a feedback or a feed-forward strategy?

Sagi Levy1, Naama Barkai.   

Abstract

In the budding yeast, a large fraction of genes is coordinately regulated with growth rate. We argue that this correlation does not reflect a direct feedback from growth rate to gene expression. Rather, what appears to be a response to growth rate is dominated by environmental sensing. External parameters, such as nutrition or temperature, feed-forward to define gene expression pattern that is tuned to the evolutionary-predicted growth rate. While such a feed-forward strategy requires fine-tuning of signaling mechanisms, and is limited in the range of environments that can be monitored, it enables advanced preparation to physiological changes that predictably occur following environmental switching. The capacity to anticipate and prepare for changing conditions was probably a major selection force during yeast evolution.

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Year:  2009        PMID: 19878679     DOI: 10.1016/j.febslet.2009.10.071

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  23 in total

1.  Growth rate-dependent control in Enterococcus faecalis: effects on the transcriptome and proteome, and strong regulation of lactate dehydrogenase.

Authors:  Ibrahim Mehmeti; Ellen M Faergestad; Martijn Bekker; Lars Snipen; Ingolf F Nes; Helge Holo
Journal:  Appl Environ Microbiol       Date:  2011-10-28       Impact factor: 4.792

Review 2.  Coordination of microbial metabolism.

Authors:  Victor Chubukov; Luca Gerosa; Karl Kochanowski; Uwe Sauer
Journal:  Nat Rev Microbiol       Date:  2014-03-24       Impact factor: 60.633

Review 3.  The importance of controlling mRNA turnover during cell proliferation.

Authors:  Sebastián Chávez; José García-Martínez; Lidia Delgado-Ramos; José E Pérez-Ortín
Journal:  Curr Genet       Date:  2016-03-23       Impact factor: 3.886

Review 4.  Mathematical modelling of microbes: metabolism, gene expression and growth.

Authors:  Hidde de Jong; Stefano Casagranda; Nils Giordano; Eugenio Cinquemani; Delphine Ropers; Johannes Geiselmann; Jean-Luc Gouzé
Journal:  J R Soc Interface       Date:  2017-11       Impact factor: 4.118

5.  The competitive advantage of a dual-transporter system.

Authors:  Sagi Levy; Moshe Kafri; Miri Carmi; Naama Barkai
Journal:  Science       Date:  2011-12-09       Impact factor: 47.728

Review 6.  Bacterial growth laws and their applications.

Authors:  Matthew Scott; Terence Hwa
Journal:  Curr Opin Biotechnol       Date:  2011-05-16       Impact factor: 9.740

7.  Resolution of gene regulatory conflicts caused by combinations of antibiotics.

Authors:  Tobias Bollenbach; Roy Kishony
Journal:  Mol Cell       Date:  2011-05-20       Impact factor: 17.970

8.  Tissue-Preferential Activity and Induction of the Pepper Capsaicin Synthase PUN1 Promoter by Wounding, Heat and Metabolic Pathway Precursor in Tobacco and Tomato Plants.

Authors:  Justin Kirke; Noah Kaplan; Stephanie Velez; Xiao-Lu Jin; Paveena Vichyavichien; Xing-Hai Zhang
Journal:  Mol Biotechnol       Date:  2018-03       Impact factor: 2.695

9.  A mechanism-aware and multiomic machine-learning pipeline characterizes yeast cell growth.

Authors:  Christopher Culley; Supreeta Vijayakumar; Guido Zampieri; Claudio Angione
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-16       Impact factor: 11.205

10.  Efflux Pump Control Alters Synthetic Gene Circuit Function.

Authors:  Junchen Diao; Daniel A Charlebois; Dmitry Nevozhay; Zoltán Bódi; Csaba Pál; Gábor Balázsi
Journal:  ACS Synth Biol       Date:  2016-05-04       Impact factor: 5.110

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