Literature DB >> 19875933

Comparative analysis of eukaryotic U3 snoRNA.

Manja Marz1, Peter F Stadler.   

Abstract

The U3 snoRNA is an exceptional box C/D snoRNA, which is involved in pre-rRNA processing without directing chemical modifications. We report here on a comprehensive computational survey resulting in U3 sequences for more than 90 additional eukaryotes. This extended data basis is used to improve the secondary structure models. The detailed investigation of the structural variation of U3 snoRNAs turns out to be much more extensive than previously thought. Many fungal U3 genes, in addition, contain introns. U3 promoters are snRNA-like but show substantial variations even between related species.

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Year:  2009        PMID： 19875933     DOI： 10.4161/rna.6.5.9607

Source DB:  PubMed          Journal:  RNA Biol        ISSN： 1547-6286            Impact factor:   4.652


  13 in total

1.  Animal snoRNAs and scaRNAs with exceptional structures.

Authors:  Manja Marz; Andreas R Gruber; Christian Höner Zu Siederdissen; Fabian Amman; Stefan Badelt; Sebastian Bartschat; Stephan H Bernhart; Wolfgang Beyer; Stephanie Kehr; Ronny Lorenz; Andrea Tanzer; Dilmurat Yusuf; Hakim Tafer; Ivo L Hofacker; Peter F Stadler
Journal:  RNA Biol       Date:  2011-11-01       Impact factor: 4.652

2.  U6 snRNA intron insertion occurred multiple times during fungi evolution.

Authors:  Sebastian Canzler; Peter F Stadler; Jana Hertel
Journal:  RNA Biol       Date:  2016       Impact factor: 4.652

Review 3.  The small subunit processome in ribosome biogenesis—progress and prospects.

Authors:  Kathleen R Phipps; J Michael Charette; Susan J Baserga
Journal:  Wiley Interdiscip Rev RNA       Date:  2011 Jan-Feb       Impact factor: 9.957

4.  Origin of the cell nucleus, mitosis and sex: roles of intracellular coevolution.

Authors:  Thomas Cavalier-Smith
Journal:  Biol Direct       Date:  2010-02-04       Impact factor: 4.540

5.  Rfam: Wikipedia, clans and the "decimal" release.

Authors:  Paul P Gardner; Jennifer Daub; John Tate; Benjamin L Moore; Isabelle H Osuch; Sam Griffiths-Jones; Robert D Finn; Eric P Nawrocki; Diana L Kolbe; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2010-11-09       Impact factor: 16.971

6.  Phylogenetic distribution of plant snoRNA families.

Authors:  Deblina Patra Bhattacharya; Sebastian Canzler; Stephanie Kehr; Jana Hertel; Ivo Grosse; Peter F Stadler
Journal:  BMC Genomics       Date:  2016-11-24       Impact factor: 3.969

7.  Evolution of Fungal U3 snoRNAs: Structural Variation and Introns.

Authors:  Sebastian Canzler; Peter F Stadler; Jana Hertel
Journal:  Noncoding RNA       Date:  2017-01-05

8.  An Evaluation of Function of Multicopy Noncoding RNAs in Mammals Using ENCODE/FANTOM Data and Comparative Genomics.

Authors:  Marc P Hoeppner; Elena Denisenko; Paul P Gardner; Sebastian Schmeier; Anthony M Poole
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

9.  Origin and evolution of the eukaryotic SSU processome revealed by a comprehensive genomic analysis and implications for the origin of the nucleolus.

Authors:  Jin-Mei Feng; Hai-Feng Tian; Jian-Fan Wen
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

10.  How Good Are Statistical Models at Approximating Complex Fitness Landscapes?

Authors:  Louis du Plessis; Gabriel E Leventhal; Sebastian Bonhoeffer
Journal:  Mol Biol Evol       Date:  2016-05-14       Impact factor: 16.240
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