Literature DB >> 19865727

Enhancing DNA hybridization kinetics through constriction-based dielectrophoresis.

Nathan Swami1, Chia-Fu Chou, Venkatraman Ramamurthy, Vasudha Chaurey.   

Abstract

The enhancement of signal sensitivity through the scaling-down of sensors presents mass transport limitations that can arrest the sensitivity gains obtained as a result of miniaturization. To alleviate these limitations, we study the application of constriction-based dielectrophoresis methods to enhance transport through pre-concentration of target DNA in the vicinity of the diffusion layer of the sensor, on which capture probe DNA molecules were immobilized. We demonstrate that constriction-based DEP pre-concentration was not impeded by scaling-down of the sensor, as long as the sensor electrode was composed of nanostructured edges and was coupled to an equally scaled down insulating constriction within a microfluidic channel to enhance the focusing effects of the constrictions and edges. Furthermore, as a result of the high focusing fields, pre-concentration of single-stranded target DNA occurred in the vicinity of the sensor pad within the relatively high ionic strength buffers required for DNA hybridization, with minimal degradation of capture probe molecules. Finally, constriction-based DEP resulted in an almost immediate pre-concentration of target DNA in the vicinity of the sensor electrode diffusion layer, resulting in a ten-fold enhancement of the DNA hybridization kinetics at target concentration values down to the sensitivity limit of 10 pM for the sensor platform.

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Year:  2009        PMID: 19865727     DOI: 10.1039/b910598k

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  25 in total

1.  Floating-electrode enhanced constriction dielectrophoresis for biomolecular trapping in physiological media of high conductivity.

Authors:  Vasudha Chaurey; Carlos Polanco; Chia-Fu Chou; Nathan S Swami
Journal:  Biomicrofluidics       Date:  2012-03-15       Impact factor: 2.800

2.  A dielectrophoretic chip with a roughened metal surface for on-chip surface-enhanced Raman scattering analysis of bacteria.

Authors:  I-Fang Cheng; Chi-Chang Lin; Dong-Yi Lin; Hsien-Chang Chang
Journal:  Biomicrofluidics       Date:  2010-08-05       Impact factor: 2.800

3.  Dielectrophoresis of DNA: Quantification by impedance measurements.

Authors:  Anja Henning; Frank F Bier; Ralph Hölzel
Journal:  Biomicrofluidics       Date:  2010-06-29       Impact factor: 2.800

4.  On-chip DNA preconcentration in different media conductivities by electrodeless dielectrophoresis.

Authors:  Shunbo Li; Ziran Ye; Yu Sanna Hui; Yibo Gao; Yusheng Jiang; Weijia Wen
Journal:  Biomicrofluidics       Date:  2015-09-30       Impact factor: 2.800

Review 5.  Alternating current electrohydrodynamics in microsystems: Pushing biomolecules and cells around on surfaces.

Authors:  Ramanathan Vaidyanathan; Shuvashis Dey; Laura G Carrascosa; Muhammad J A Shiddiky; Matt Trau
Journal:  Biomicrofluidics       Date:  2015-12-08       Impact factor: 2.800

6.  Low-frequency dielectrophoretic response of a single particle in aqueous suspensions.

Authors:  Jingyu Wang; Ming-Tzo Wei; H Daniel Ou-Yang
Journal:  Biomicrofluidics       Date:  2016-01-14       Impact factor: 2.800

Review 7.  Nanomaterial-based electrochemical sensing of neurological drugs and neurotransmitters.

Authors:  Bankim J Sanghavi; Otto S Wolfbeis; Thomas Hirsch; Nathan S Swami
Journal:  Mikrochim Acta       Date:  2014-07-08       Impact factor: 5.833

8.  Quantifying spatio-temporal dynamics of biomarker pre-concentration and depletion in microfluidic systems by intensity threshold analysis.

Authors:  Ali Rohani; Walter Varhue; Yi-Hsuan Su; Nathan S Swami
Journal:  Biomicrofluidics       Date:  2014-10-06       Impact factor: 2.800

Review 9.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Authors:  Kevin D Dorfman; Scott B King; Daniel W Olson; Joel D P Thomas; Douglas R Tree
Journal:  Chem Rev       Date:  2012-11-12       Impact factor: 60.622

10.  Frequency-selective electrokinetic enrichment of biomolecules in physiological media based on electrical double-layer polarization.

Authors:  Ali Rohani; Bankim J Sanghavi; Armita Salahi; Kuo-Tang Liao; Chia-Fu Chou; Nathan S Swami
Journal:  Nanoscale       Date:  2017-08-24       Impact factor: 7.790

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