Literature DB >> 19861586

Endocrine pulse identification using penalized methods and a minimum set of assumptions.

Daniel J Vis1, Johan A Westerhuis, Huub C J Hoefsloot, Hanno Pijl, Ferdinand Roelfsema, Jan van der Greef, Age K Smilde.   

Abstract

The detection of hormone secretion episodes is important for understanding normal and abnormal endocrine functioning, but pulse identification from hormones measured with short interval sampling is challenging. Furthermore, to obtain useable results, the model underlying hormone secretion and clearance must be augmented with restrictions based on biologically acceptable assumptions. Here, using the assumption that there are only a few time points at which a hormone is secreted, we used a modern penalized nonlinear least-squares setup to select the number of secretion events. We did not assume a particular shape or frequency distribution for the secretion pulses. Our pulse identfication method, VisPulse, worked well with luteinizing hormone (LH), cortisol, growth hormone, or testosterone. In particular, applying our modeling strategy to previous LH data revealed a good correlation between the modeled and measured LH hormone concentrations, the estimated secretion pattern was sparse, and the small and structureless residuals indicated a proper model with a good fit. We benchmarked our method to AutoDecon, a commonly used hormone secretion model, and performed releasing hormone infusion experiments. The results of these experiments confirmed that our method is accurate and outperforms AutoDecon, especially for detecting silent periods and small secretion events, suggesting a high-secretion event resolution. Method validation using (releasing hormone) infusion data revealed sensitivities and selectivities of 0.88 and 0.95 and of 0.69 and 0.91 for VisPulse and AutoDecon, respectively.

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Year:  2009        PMID: 19861586     DOI: 10.1152/ajpendo.00048.2009

Source DB:  PubMed          Journal:  Am J Physiol Endocrinol Metab        ISSN: 0193-1849            Impact factor:   4.310


  6 in total

1.  Dynamic metabolomic data analysis: a tutorial review.

Authors:  A K Smilde; J A Westerhuis; H C J Hoefsloot; S Bijlsma; C M Rubingh; D J Vis; R H Jellema; H Pijl; F Roelfsema; J van der Greef
Journal:  Metabolomics       Date:  2009-12-04       Impact factor: 4.290

2.  Quantifying Pituitary-Adrenal Dynamics and Deconvolution of Concurrent Cortisol and Adrenocorticotropic Hormone Data by Compressed Sensing.

Authors:  Rose T Faghih; Munther A Dahleh; Gail K Adler; Elizabeth B Klerman; Emery N Brown
Journal:  IEEE Trans Biomed Eng       Date:  2015-04-29       Impact factor: 4.538

3.  High-performance metabolic profiling of plasma from seven mammalian species for simultaneous environmental chemical surveillance and bioeffect monitoring.

Authors:  Youngja H Park; Kichun Lee; Quinlyn A Soltow; Frederick H Strobel; Kenneth L Brigham; Richard E Parker; Mark E Wilson; Roy L Sutliff; Keith G Mansfield; Lynn M Wachtman; Thomas R Ziegler; Dean P Jones
Journal:  Toxicology       Date:  2012-03-01       Impact factor: 4.221

4.  Detecting regulatory mechanisms in endocrine time series measurements.

Authors:  Daniel J Vis; Johan A Westerhuis; Huub C J Hoefsloot; Ferdinand Roelfsema; Margriet M W B Hendriks; Age K Smilde
Journal:  PLoS One       Date:  2012-03-26       Impact factor: 3.240

5.  Deconvolution of serum cortisol levels by using compressed sensing.

Authors:  Rose T Faghih; Munther A Dahleh; Gail K Adler; Elizabeth B Klerman; Emery N Brown
Journal:  PLoS One       Date:  2014-01-28       Impact factor: 3.240

6.  Network identification of hormonal regulation.

Authors:  Daniel J Vis; Johan A Westerhuis; Huub C J Hoefsloot; Ferdinand Roelfsema; Jan van der Greef; Margriet M W B Hendriks; Age K Smilde
Journal:  PLoS One       Date:  2014-05-22       Impact factor: 3.240

  6 in total

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