Literature DB >> 19858216

Each monomer of the dimeric accessory protein for human mitochondrial DNA polymerase has a distinct role in conferring processivity.

Young-Sam Lee1, Sujin Lee, Borries Demeler, Ian J Molineux, Kenneth A Johnson, Y Whitney Yin.   

Abstract

The accessory protein polymerase (pol) gammaB of the human mitochondrial DNA polymerase stimulates the synthetic activity of the catalytic subunit. pol gammaB functions by both accelerating the polymerization rate and enhancing polymerase-DNA interaction, thereby distinguishing itself from the accessory subunits of other DNA polymerases. The molecular basis for the unique functions of human pol gammaB lies in its dimeric structure, where the pol gammaB monomer proximal to pol gammaA in the holoenzyme strengthens the interaction with DNA, and the distal pol gammaB monomer accelerates the reaction rate. We further show that human pol gammaB exhibits a catalytic subunit- and substrate DNA-dependent dimerization. By duplicating the monomeric pol gammaB of lower eukaryotes, the dimeric mammalian proteins confer additional processivity to the holoenzyme polymerase.

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Year:  2009        PMID: 19858216      PMCID: PMC2801274          DOI: 10.1074/jbc.M109.062752

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  26 in total

1.  Exonuclease proofreading by human mitochondrial DNA polymerase.

Authors:  A A Johnson; K A Johnson
Journal:  J Biol Chem       Date:  2001-07-26       Impact factor: 5.157

2.  DNA binding properties of human pol gammaB.

Authors:  José A Carrodeguas; Kevin G Pinz; Daniel F Bogenhagen
Journal:  J Biol Chem       Date:  2002-10-11       Impact factor: 5.157

3.  The cytomegalovirus DNA polymerase subunit UL44 forms a C clamp-shaped dimer.

Authors:  Brent A Appleton; Arianna Loregian; David J Filman; Donald M Coen; James M Hogle
Journal:  Mol Cell       Date:  2004-07-23       Impact factor: 17.970

4.  A mitochondrial DNA polymerase from embryos of Drosophila melanogaster. Purification, subunit structure, and partial characterization.

Authors:  C M Wernette; L S Kaguni
Journal:  J Biol Chem       Date:  1986-11-05       Impact factor: 5.157

5.  Deoxyribonucleic acid polymerase of bacteriophage T7. Purification and properties of the phage-encoded subunit, the gene 5 protein.

Authors:  K Hori; D F Mark; C C Richardson
Journal:  J Biol Chem       Date:  1979-11-25       Impact factor: 5.157

6.  DNA polymerase III holoenzyme of Escherichia coli. Purification and resolution into subunits.

Authors:  C McHenry; A Kornberg
Journal:  J Biol Chem       Date:  1977-09-25       Impact factor: 5.157

7.  Analysis of data from the analytical ultracentrifuge by nonlinear least-squares techniques.

Authors:  M L Johnson; J J Correia; D A Yphantis; H R Halvorson
Journal:  Biophys J       Date:  1981-12       Impact factor: 4.033

8.  Human mitochondrial DNA polymerase holoenzyme: reconstitution and characterization.

Authors:  A A Johnson; Y c Tsai; S W Graves; K A Johnson
Journal:  Biochemistry       Date:  2000-02-22       Impact factor: 3.162

9.  Crystal structure and deletion analysis show that the accessory subunit of mammalian DNA polymerase gamma, Pol gamma B, functions as a homodimer.

Authors:  J A Carrodeguas; K Theis; D F Bogenhagen; C Kisker
Journal:  Mol Cell       Date:  2001-01       Impact factor: 17.970

10.  Structural insight into processive human mitochondrial DNA synthesis and disease-related polymerase mutations.

Authors:  Young-Sam Lee; W Dexter Kennedy; Y Whitney Yin
Journal:  Cell       Date:  2009-10-16       Impact factor: 41.582

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  28 in total

Review 1.  Mitochondrial DNA replication and disease: insights from DNA polymerase γ mutations.

Authors:  Jeffrey D Stumpf; William C Copeland
Journal:  Cell Mol Life Sci       Date:  2010-10-08       Impact factor: 9.261

2.  Mitochondrial Single-stranded DNA-binding Proteins Stimulate the Activity of DNA Polymerase γ by Organization of the Template DNA.

Authors:  Grzegorz L Ciesielski; Oya Bermek; Fernando A Rosado-Ruiz; Stacy L Hovde; Orrin J Neitzke; Jack D Griffith; Laurie S Kaguni
Journal:  J Biol Chem       Date:  2015-10-07       Impact factor: 5.157

3.  Exonuclease of human DNA polymerase gamma disengages its strand displacement function.

Authors:  Quan He; Christie K Shumate; Mark A White; Ian J Molineux; Y Whitney Yin
Journal:  Mitochondrion       Date:  2013-08-30       Impact factor: 4.160

Review 4.  Structural insight on processivity, human disease and antiviral drug toxicity.

Authors:  Y Whitney Yin
Journal:  Curr Opin Struct Biol       Date:  2010-12-24       Impact factor: 6.809

5.  Translesion synthesis past acrolein-derived DNA adducts by human mitochondrial DNA polymerase γ.

Authors:  Rajesh Kasiviswanathan; Irina G Minko; R Stephen Lloyd; William C Copeland
Journal:  J Biol Chem       Date:  2013-03-30       Impact factor: 5.157

Review 6.  Animal Mitochondrial DNA Replication.

Authors:  G L Ciesielski; M T Oliveira; L S Kaguni
Journal:  Enzymes       Date:  2016-05-09

7.  Mapping 136 pathogenic mutations into functional modules in human DNA polymerase γ establishes predictive genotype-phenotype correlations for the complete spectrum of POLG syndromes.

Authors:  Gregory A Farnum; Anssi Nurminen; Laurie S Kaguni
Journal:  Biochim Biophys Acta       Date:  2014-02-07

Review 8.  A mechanistic view of human mitochondrial DNA polymerase gamma: providing insight into drug toxicity and mitochondrial disease.

Authors:  Christopher M Bailey; Karen S Anderson
Journal:  Biochim Biophys Acta       Date:  2010-01-18

Review 9.  Mitochondrial DNA maintenance: an appraisal.

Authors:  Alexander T Akhmedov; José Marín-García
Journal:  Mol Cell Biochem       Date:  2015-08-19       Impact factor: 3.396

10.  Functional roles of the N- and C-terminal regions of the human mitochondrial single-stranded DNA-binding protein.

Authors:  Marcos T Oliveira; Laurie S Kaguni
Journal:  PLoS One       Date:  2010-10-28       Impact factor: 3.240

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