Literature DB >> 19850370

Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more.

François Roudier1, Felipe Karam Teixeira, Vincent Colot.   

Abstract

Packaging DNA into chromatin is pivotal for the regulation of genome activity in eukaryotes. This chromatin-level control relies on a range of histone modifications and variants, chromatin-remodeling proteins and DNA methylation in plants and mammals. High-resolution maps have recently been obtained for several chromatin modifications in Arabidopsis, which provide a first glimpse at the organization of plant epigenomes. These maps suggest a pervasive involvement of transcriptional activity in indexing chromatin with reference to the underlying DNA sequence. However, to assess the contribution of chromatin dynamics to plant development and phenotypic plasticity, it will be necessary to shift from a static to a dynamic view of the Arabidopsis epigenome.

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Year:  2009        PMID: 19850370     DOI: 10.1016/j.tig.2009.09.013

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  46 in total

Review 1.  Perspectives on leaf dorsoventral polarity.

Authors:  Dóra Szakonyi; Alexis Moschopoulos; Mary E Byrne
Journal:  J Plant Res       Date:  2010-04-06       Impact factor: 2.629

2.  Inference of transcriptional networks in Arabidopsis through conserved noncoding sequence analysis.

Authors:  Jan Van de Velde; Ken S Heyndrickx; Klaas Vandepoele
Journal:  Plant Cell       Date:  2014-07-02       Impact factor: 11.277

Review 3.  Epigenetic regulation in plants.

Authors:  Craig S Pikaard; Ortrun Mittelsten Scheid
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-12-01       Impact factor: 10.005

4.  The PHD-finger module of the Arabidopsis thaliana defense regulator EDM2 can recognize triply modified histone H3 peptides.

Authors:  Tokuji Tsuchiya; Thomas Eulgem
Journal:  Plant Signal Behav       Date:  2014

5.  Sulfamethazine suppresses epigenetic silencing in Arabidopsis by impairing folate synthesis.

Authors:  Huiming Zhang; Xiangyang Deng; Daisuke Miki; Sean Cutler; Honggui La; Yueh-Ju Hou; Jeeeun Oh; Jian-Kang Zhu
Journal:  Plant Cell       Date:  2012-03-23       Impact factor: 11.277

6.  Inheritance of Trans Chromosomal Methylation patterns from Arabidopsis F1 hybrids.

Authors:  Ian K Greaves; Michael Groszmann; Aihua Wang; W James Peacock; Elizabeth S Dennis
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

7.  The Histone Deacetylase Complex 1 Protein of Arabidopsis Has the Capacity to Interact with Multiple Proteins Including Histone 3-Binding Proteins and Histone 1 Variants.

Authors:  Giorgio Perrella; Craig Carr; Maria A Asensi-Fabado; Naomi A Donald; Katalin Páldi; Matthew A Hannah; Anna Amtmann
Journal:  Plant Physiol       Date:  2016-03-07       Impact factor: 8.340

8.  Stress-induced activation of heterochromatic transcription.

Authors:  Mireille Tittel-Elmer; Etienne Bucher; Larissa Broger; Olivier Mathieu; Jerzy Paszkowski; Isabelle Vaillant
Journal:  PLoS Genet       Date:  2010-10-28       Impact factor: 5.917

9.  Digital expression profiling of novel diatom transcripts provides insight into their biological functions.

Authors:  Uma Maheswari; Kamel Jabbari; Jean-Louis Petit; Betina M Porcel; Andrew E Allen; Jean-Paul Cadoret; Alessandra De Martino; Marc Heijde; Raymond Kaas; Julie La Roche; Pascal J Lopez; Véronique Martin-Jézéquel; Agnès Meichenin; Thomas Mock; Micaela Schnitzler Parker; Assaf Vardi; E Virginia Armbrust; Jean Weissenbach; Michaël Katinka; Chris Bowler
Journal:  Genome Biol       Date:  2010-08-25       Impact factor: 13.583

10.  Environmental History Modulates Arabidopsis Pattern-Triggered Immunity in a HISTONE ACETYLTRANSFERASE1-Dependent Manner.

Authors:  Prashant Singh; Shweta Yekondi; Po-Wen Chen; Chia-Hong Tsai; Chun-Wei Yu; Keqiang Wu; Laurent Zimmerli
Journal:  Plant Cell       Date:  2014-06-24       Impact factor: 11.277

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